Proteomics

Dataset Information

0

Fibrinogen chain positive circulating exosomes are a colorectal cancer potential biomarker


ABSTRACT: Exosomes are small vesicles contain cellular nucleic acids, proteins, lipids and other substances secreted by living cells. The special structure of exosomes makes it possible to protect the inside contents exist in blood stably. Recent researches showed that exosomes are blame for tumor metastatic dissemination, recurrence and malignance, which makes them strong competitors in diagnosis of cancer. The proteomics of exosomes in circulatory system as well as the phosphorylation state of them through different stages of colorectal cancer (CRC) process remain rarely reported. Here we isolate and identify proteins and phosphorylated protein in exosomes from human plasma in healthy donors and different stages of CRC patients by prolonged ultracentrifugation and liquid chromatography coupled to tandem mass spectrometry (LC-MS/MS) analysis. In this study, a total of 462 quantitative proteins were identified, meanwhile, the strategy allowed us to identify 177 quantifiable proteins along with 315 sites. Proteins with notable different levels are verified and fibrinogen chain positive (FGA+) circulating exosomes (crExos) from patients and from mice could identify CRC with excellent sensitivity and specificity while perform very well in early diagnosis of adenomas. According to our findings, FGA+ crExos could serve as a potential non-invasive diagnostic and screening tool to detect early stages of CRC to facilitate possible curative surgical therapy.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Cell Culture

SUBMITTER: Chenyu Lu  

LAB HEAD: Shu Zheng

PROVIDER: PXD009490 | Pride | 2020-05-26

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
1.raw Raw
10.raw Raw
11.raw Raw
12.raw Raw
13.raw Raw
Items per page:
1 - 5 of 30
altmetric image

Publications

A circulating extracellular vesicles-based novel screening tool for colorectal cancer revealed by shotgun and data-independent acquisition mass spectrometry.

Zheng Xi X   Xu Kailun K   Zhou Biting B   Chen Ting T   Huang Yanqin Y   Li Qilong Q   Wen Fei F   Ge Weiting W   Wang Jian J   Yu Shaojun S   Sun Lifeng L   Zhu Liang L   Liu Wei W   Gao Huanhuan H   Yue Liang L   Cai Xue X   Zhang Qiushi Q   Ruan Guan G   Zhu Tiansheng T   Wu Zhicheng Z   Zhu Yi Y   Shao Yingkuan Y   Guo Tiannan T   Zheng Shu S  

Journal of extracellular vesicles 20200414 1


<b>Background</b>: Early screening for colorectal cancer (CRC) is essential to improve its prognosis. Liquid biopsies are increasingly being considered for diagnosing cancer due to low invasiveness and high reproducibility. In addition, circulating extracellular vesicles (crEVs, extracellular vesicles isolated from plasma) expressing tumour-specific proteins are potential biomarkers for various cancers. Here, we present a data-independent acquisition (DIA)-mass spectrometry (MS)-based diagnostic  ...[more]

Similar Datasets

2022-09-30 | E-MTAB-12041 | biostudies-arrayexpress
2016-08-26 | PXD001794 | Pride
2016-01-07 | E-GEOD-76583 | biostudies-arrayexpress
2016-12-12 | PXD003875 | Pride
2023-01-05 | PXD029703 | Pride
2014-02-22 | E-GEOD-55259 | biostudies-arrayexpress
2014-08-26 | E-GEOD-60697 | biostudies-arrayexpress
2019-11-01 | E-MTAB-6928 | biostudies-arrayexpress
2012-11-01 | E-GEOD-25228 | biostudies-arrayexpress
2012-03-30 | E-GEOD-28281 | biostudies-arrayexpress