Proteomics

Dataset Information

0

Proteomics of Gammarus fossarum A individuals sampled from the wild


ABSTRACT: Next-generation proteomics of Gammarus fossarum A animals sampled from the Seebach river in north-eastern France.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Gammarus Fossarum

TISSUE(S): Whole Body

SUBMITTER: Jean ARMENGAUD  

LAB HEAD: Jean Armengaud

PROVIDER: PXD014166 | Pride | 2020-04-17

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
DB19_1.dat Other
DB19_1.mzid.gz Mzid
DB19_1.pride.mztab.gz Mztab
DB19_2.dat Other
DB19_2.mzid.gz Mzid
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Publications

Proteogenomics-Guided Evaluation of RNA-Seq Assembly and Protein Database Construction for Emergent Model Organisms.

Cogne Yannick Y   Gouveia Duarte D   Chaumot Arnaud A   Degli-Esposti Davide D   Geffard Olivier O   Pible Olivier O   Almunia Christine C   Armengaud Jean J  

Proteomics 20200518 10


Proteogenomics is gaining momentum as, today, genomics, transcriptomics, and proteomics can be readily performed on any new species. This approach allows key alterations to molecular pathways to be identified when comparing conditions. For animals and plants, RNA-seq-informed proteomics is the most popular means of interpreting tandem mass spectrometry spectra acquired for species for which the genome has not yet been sequenced. It relies on high-performance de novo RNA-seq assembly and optimize  ...[more]

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