Proteomics

Dataset Information

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The HLA-Ligand-Atlas. A resource of natural HLA ligands presented on benign tissues

ABSTRACT: A use case of the benign HLA-Ligand-Atlas is the prioritization of tumor-associated targets for e.g. peptide vaccination. Based on three glioblastoma samples, we illustrated how many of these peptides are covered in the benign dataset. The experimental and computational workflow for the isolation and identification of the glioblastoma immunopeptidomes is the same, as for all samples included in the HLA Ligand Atlas. As the three glioblastoma samples are not included in the HLA Ligand Atlas dataset, they have been deposited under a separate submission.

INSTRUMENT(S): Orbitrap Fusion Lumos

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Brain

DISEASE(S): Brain Glioblastoma Multiforme

SUBMITTER: Ana Marcu  

LAB HEAD: Hans-Georg Rammensee

PROVIDER: PXD020186 | Pride | 2021-04-16

REPOSITORIES: Pride

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Dataset's files

Source:
Action DRS
AM_GBM-DN616_Tue39L243_10_DDA_merged_400-1000mz_standard_all_ids_merged_psm_perc_filtered.mzid.gz Mzid
AM_GBM-DN616_W6-32_10_DDA_merged_400-650mz_standard_all_ids_merged_psm_perc_filtered.mzid.gz Mzid
AM_GBM-DN654_Tue39L243_10_DDA_merged_400-1000mz_standard_all_ids_merged_psm_perc_filtered.mzid.gz Mzid
AM_GBM-DN654_W6-32_10_DDA_merged_400-650mz_standard_all_ids_merged_psm_perc_filtered.mzid.gz Mzid
AM_GBM-DN753_Tue39L243_10_DDA_merged_400-1000mz_standard_all_ids_merged_psm_perc_filtered.mzid.gz Mzid
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Publications

<h4>Background</h4>The human leucocyte antigen (HLA) complex controls adaptive immunity by presenting defined fractions of the intracellular and extracellular protein content to immune cells. Understanding the benign HLA ligand repertoire is a prerequisite to define safe T-cell-based immunotherapies against cancer. Due to the poor availability of benign tissues, if available, normal tissue adjacent to the tumor has been used as a benign surrogate when defining tumor-associated antigens. However,  ...[more]

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