Proteomics

Dataset Information

0

Cdk5r1_KO_TMT-10plex_brain_cell-autonomous_proteomics


ABSTRACT: Concerted radial migration of newly born cortical projection neurons, from their birthplace to their final target lamina, is a key step in the assembly of the cerebral cortex. The cellular and molecular mechanisms regulating radial neuronal migration in vivo are however still unclear, let alone the effects and interactions with the extracellular environment. Recent evidence suggests that distinct signalling cues act cell-autonomously but differentially at particular steps during the overall migration process. Functional MADM (Mosaic Analysis with Double Markers) analyses in comparison to global knockout also indicate a significant degree of non-cell-autonomous and/or community effects in the control of cortical neuron migration. In this project, we established a MADM-based experimental strategy for the quantitative analysis of cell-autonomous gene function versus non-autonomous and/or community effects, focusing on the Cdk5r1 gene, a neuron-specific activator of Cyclin Dependent Kinase 5 known to play a role, among other functions, in neuronal migration during brain development. This dataset corresponds to a TMT-10plex based proteomics analysis of the effects of full or mosaic KO of Cdk5r1 on the neuronal proteome and aims to provide insights into its distinct cell-autonomous and non-autonomous roles in neuronal migration. This dataset and complementary experimental approaches were integrated using computational modelling to define so far unknown cell-autonomous functions of candidate signalling pathways intersecting with non-cell-autonomous effects to coordinate radial neuron migration.

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Mus Musculus (mouse)

TISSUE(S): Brain, Neuron

SUBMITTER: Armel Nicolas  

LAB HEAD: Simon Hippenmeyer

PROVIDER: PXD023222 | Pride | 2024-05-22

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
LCMS_Andi_1_-_TMT1_-_Frac1.raw Raw
LCMS_Andi_1_-_TMT1_-_Frac2.raw Raw
LCMS_Andi_1_-_TMT1_-_Frac3.raw Raw
LCMS_Andi_1_-_TMT1_-_Frac4.raw Raw
LCMS_Andi_1_-_TMT1_-_Frac5.raw Raw
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Publications


The mammalian neocortex is composed of diverse neuronal and glial cell classes that broadly arrange in six distinct laminae. Cortical layers emerge during development and defects in the developmental programs that orchestrate cortical lamination are associated with neurodevelopmental diseases. The developmental principle of cortical layer formation depends on concerted radial projection neuron migration, from their birthplace to their final target position. Radial migration occurs in defined seq  ...[more]

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