Proteomics

Dataset Information

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Complexome profiling to study consequences of membrane protein complexes in cells with knock down of ceramide synthase 4 and 5 in HCT-116 and Caco-2 cells.


ABSTRACT: Ceramide synthases are central enzymes of the sphingolipid pathway and are important for the production of sphingolipids of different chain length. Sphingolipids of different chain length impact the physicochemical properties of membranes. Here we investigated by complexome profiling how the expression level of membrane proteins is affected in human colon cancer cells (Caco-2 and HCT-116) that were transduced with a shRNA against CerS4 or CerS5 to downregulate both enzymes.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Cell Culture

SUBMITTER: Ilka Wittig  

LAB HEAD: Sabine Grösch

PROVIDER: PXD030604 | Pride | 2025-01-07

REPOSITORIES: pride

Dataset's files

Source:
Action DRS
Data_Analysis_Caco.xlsx Xlsx
Data_analysis_HCT116.xlsx Xlsx
Gel_Caco.JPG Other
Gel_HCT116.jpg Other
P19_032_SabineGroesch_CerS4_10_01.raw Raw
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Publications


Sphingolipids are important for the physicochemical properties of cellular membranes and deregulated in tumors. In human colon cancer tissue ceramide synthase (CerS) 4 and CerS5 are reduced which correlates with a reduced survival probability of late-stage colon cancer patients. Both enzymes are reduced after hypoxia in advanced colorectal cancer (CRC) cells (HCT-116, SW620) but not in non-metastatic CRC cells (SW480, Caco-2). Downregulation of CerS4 or CerS5 in advanced CRC cells enhanced tumor  ...[more]

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