Proteomics

Dataset Information

0

Combined measurements of proteome and cell turnover reveal the influences of tissue context and pathological aging on protein and organelle lifetimes


ABSTRACT: The lifespans of proteins can range from moments to years within mammalian tissues. Protein lifespan is relevant to organismal aging, as long-lived proteins can accrue damage over time. It is unclear how protein lifetime is shaped by tissue context, where both cell division and proteolytic degradation contribute to protein turnover. Here, we develop turnover and replication analysis by 15N isotope labeling (TRAIL) for parallel quantification of protein and cell lifetimes. We deploy TRAIL over 32 days in 4 mouse tissues to quantify cell proliferation with high precision and no toxicity and determine that protein lifespan varies independently of cell lifespan. Variation in protein lifetime is non-random: multiprotein complexes such as the ribosome have consistent lifetimes across tissues, while mitochondria, peroxisomes, and lipid droplets have variable lifetimes across tissues. To model the effects of aging on tissue homeostasis, we apply TRAIL to progeroid mice and uncover fat-specific alterations in cell lifetime and proteome composition, as well as a broad decrease in protein turnover flux. These data indicate that environmental factors influence protein turnover in vivo and provide a framework to understand proteome aging in tissue context.

INSTRUMENT(S): Orbitrap Fusion Lumos

ORGANISM(S): Mus Musculus (mouse)

TISSUE(S): Heart, Intestine, Liver, Aorta, Adipose Tissue

SUBMITTER: Kyle Swovick  

LAB HEAD: Abigail Buchwalter

PROVIDER: PXD033649 | Pride | 2023-03-21

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
Buchwalter_Adipose-Rep1-E1.raw Raw
Buchwalter_Adipose-Rep1-E2.raw Raw
Buchwalter_Adipose-Rep1-E3.raw Raw
Buchwalter_Adipose-Rep1-E4.raw Raw
Buchwalter_Adipose-Rep1-E5.raw Raw
Items per page:
1 - 5 of 151
altmetric image

Publications

Turnover and replication analysis by isotope labeling (TRAIL) reveals the influence of tissue context on protein and organelle lifetimes.

Hasper John J   Welle Kevin K   Hryhorenko Jennifer J   Ghaemmaghami Sina S   Buchwalter Abigail A  

Molecular systems biology 20230317 4


The lifespans of proteins range from minutes to years within mammalian tissues. Protein lifespan is relevant to organismal aging, as long-lived proteins accrue damage over time. It is unclear how protein lifetime is shaped by tissue context, where both cell turnover and proteolytic degradation contribute to protein turnover. We develop turnover and replication analysis by <sup>15</sup> N isotope labeling (TRAIL) to quantify protein and cell lifetimes with high precision and demonstrate that cell  ...[more]

Similar Datasets

2018-03-19 | PXD007156 | Pride
2024-05-06 | GSE263941 | GEO
2020-05-07 | PXD018325 | Pride
2015-06-23 | E-GEOD-69806 | biostudies-arrayexpress
2023-02-03 | PXD037230 | Pride
2020-11-17 | PXD017496 | Pride
2010-07-30 | E-GEOD-21341 | biostudies-arrayexpress
2024-01-12 | PXD035293 | Pride
2018-11-15 | PXD010859 | Pride
2006-01-01 | E-MEXP-247 | biostudies-arrayexpress