Proteomics

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Proteome profiling of whole plasma and plasma-derived extracellular vesicles facilitates the detection of tissue biomarkers in the non-obese diabetic (NOD) mouse

ABSTRACT: Using plasma samples collected from pre-diabetic non-obese diabetic (NOD) mice (an experimental model of T1D) we performed parallel analysis of whole plasma samples and plasma-derived extracellular vesicle (EV) fractions using mass spectrometry (MS). Whole plasma samples were depleted of abundant proteins (albumin, transferrin and IgG) and subjected to high resolution isoelectric focusing (HiRIEF) LC-MS and relative quantification by TMT 10-plex. EV-enriched samples were analyzed by standard LC-MS/MS. Our results suggest that parallel profiling of EV-enriched plasma fractions and whole plasma samples increases the overall proteome depth and facilitates the discovery of tissue-enriched proteins in plasma.

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Mus Musculus (mouse)

TISSUE(S): Blood Plasma

SUBMITTER: Xiaofang Cao  

LAB HEAD: Janne Lehtiö

PROVIDER: PXD033867 | Pride | 2022-10-20

REPOSITORIES: Pride

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XCMTHS1-9_20190717_HFTo_400ms_setA_1mg_IPG3-10_fr01.raw Raw
XCMTHS1-9_20190717_HFTo_400ms_setA_1mg_IPG3-10_fr02.raw Raw
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Proteome profiling of whole plasma and plasma-derived extracellular vesicles facilitates the detection of tissue biomarkers in the non-obese diabetic mouse.

Diaz Lozano Isabel M IM   Sork Helena H   Stone Virginia M VM   Eldh Maria M   Cao Xiaofang X   Pernemalm Maria M   Gabrielsson Susanne S   Flodström-Tullberg Malin M  

Frontiers in endocrinology 20220928

The mechanism by which pancreatic beta cells are destroyed in type 1 diabetes (T1D) remains to be fully understood. Recent observations indicate that the disease may arise because of different pathobiological mechanisms (endotypes). The discovery of one or several protein biomarkers measurable in readily available liquid biopsies (e.g. blood plasma) during the pre-diabetic period may enable personalized disease interventions. Recent studies have shown that extracellular vesicles (EVs) are a sour  ...[more]

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