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Reanalysis of dataset PXD003791: “MuSt multiomics - Integrated multi-omics of the human gut microbiome in a case study of familial type 1 diabetes”

ABSTRACT: This project contains raw data, intermediate files and results is a re-analysis of the publicly available dataset from the PRIDE dataset PXD003791. The RAW files were processed using ThermoRawFileParser, SearchGUI and PeptideShaker through standard settings (see ‘Data Processing Protocol’). This reanalysis work is part of the MetaPUF (MetaProteomics with Unknown Function) project, which is a collaboration between EMBL-EBI and the University of Luxembourg. The dataset was selected with the following conditions: 1. It has been made publicly available in PRIDE and focuses on metaproteomics of the human gut; 2. The corresponding metagenomics assemblies were also available from ENA (European Nucleotide Archive) or MGnify. The processed peptide reports for each sample are available to view at the contig level on the MGnify website. In total, the reanalysis identified 59,613 unique proteins from 36 samples.

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Homo Sapiens (human)

SUBMITTER: Shengbo Wang

LAB HEAD: Juan Antonio Vizcaino

PROVIDER: PXD034617 | Pride | 2022-06-17

REPOSITORIES: Pride

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Dataset's files

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			Action	DRS
	130729-27672-12-ATH-F01.raw	Raw
	130729-27672-12-ATH-F02.raw	Raw
	130729-27672-12-ATH-F03.raw	Raw
	130729-27673-12-ATH-F01.raw	Raw
	130729-27673-12-ATH-F02.raw	Raw

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