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Reanalysis of dataset PXD020692: “Washington state shellfish hatchery microbiome”

ABSTRACT: This project contains raw data, intermediate files and results is a re-analysis of the publicly available dataset from the PRIDE dataset PXD020692. The RAW files were processed using ThermoRawFileParser, SearchGUI and PeptideShaker through standard settings (see ‘Data Processing Protocol’). This reanalysis work is part of the MetaPUF (MetaProteomics with Unknown Function) project, which is a collaboration between EMBL-EBI and the University of Luxembourg. The dataset was selected with the following conditions: 1. It has been made publicly available in PRIDE and focuses on metaproteomics; 2. The corresponding metagenomics assemblies were also available from ENA (European Nucleotide Archive) or MGnify. The processed peptide reports for each sample are available to view at the contig level on the MGnify website. In total, the reanalysis identified 268 unique proteins from 36 samples.

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Marine Metagenome

SUBMITTER: Shengbo Wang

LAB HEAD: Juan Antonio Vizcaino

PROVIDER: PXD038539 | Pride | 2023-11-03

REPOSITORIES: Pride

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Dataset's files

Source:

			Action	DRS
	2018_March_5_UWPRQE_HatchMicro_03.raw	Raw
	2018_March_5_UWPRQE_HatchMicro_04.raw	Raw
	2018_March_5_UWPRQE_HatchMicro_05.raw	Raw
	2018_March_5_UWPRQE_HatchMicro_06.raw	Raw
	2018_March_5_UWPRQE_HatchMicro_07.raw	Raw

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