Proteomics

Dataset Information

0

Integrated with Proteome-sequencing, bulk RNA-sequencing and Single cell RNA-sequencing to identify potential biomarkers in different grades of intervertebral disc degeneration


ABSTRACT: We selected humann intervertebral disc samples to perform proteomics analysis. There were 1 case of grade I , 1 case of grade II, 3 cases of grade Ⅲ and 3 cases of grade Ⅳ according to Pfirrmann classfication. RNA seqencing analysis and single-cell RNA sequencing were integrated with proteomics data to identify the hub genes for intervertebral disc degeneration using bioinformatic method.

INSTRUMENT(S): TripleTOF 5600

ORGANISM(S): Homo Sapiens (human)

SUBMITTER: Xiao Yang  

LAB HEAD: Lei Chu

PROVIDER: PXD040593 | Pride | 2023-05-10

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
checksum.txt Txt
cl_01.wiff Wiff
cl_01.wiff.scan Wiff
cl_02.wiff Wiff
cl_02.wiff.scan Wiff
Items per page:
1 - 5 of 20
altmetric image

Publications

Integrated proteome sequencing, bulk RNA sequencing and single-cell RNA sequencing to identify potential biomarkers in different grades of intervertebral disc degeneration.

Yang Xiao X   Lu Yang Y   Zhou Hang H   Jiang Hai-Tao HT   Chu Lei L  

Frontiers in cell and developmental biology 20230316


Low back pain (LBP) is a prevalent health problem worldwide that affects over 80% of adults during their lifetime. Intervertebral disc degeneration (IDD) is a well-recognized leading cause of LBP. IDD is classified into five grades according to the Pfirrmann classification system. The purpose of this study was to identify potential biomarkers in different IDD grades through an integrated analysis of proteome sequencing (PRO-seq), bulk RNA sequencing (bRNA-seq) and single-cell RNA sequencing (scR  ...[more]

Similar Datasets

2022-06-09 | PXD018968 | Pride
2012-05-31 | E-GEOD-34095 | biostudies-arrayexpress
2019-02-13 | GSE110804 | GEO
2021-09-09 | PXD016560 | Pride
2023-12-31 | GSE153066 | GEO
2015-01-15 | E-GEOD-64964 | biostudies-arrayexpress
2012-06-26 | E-GEOD-27494 | biostudies-arrayexpress
2010-12-01 | E-MEXP-2488 | biostudies-arrayexpress
2015-10-23 | E-GEOD-70362 | biostudies-arrayexpress
2024-05-14 | GSE186549 | GEO