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Stoichiometry of MBD2 vs. MBD3-NuRD

ABSTRACT: To obtain a comprehensive and quantitative view on MBD2 vs MBD3-NuRD complex stoichiometry, we performed biotin co-immunoprecipitations in Mbd3 KO ES cells expressing either biotin-tagged MBD2a or MBD3a and identified known NuRD complex members using label-free mass spectrometry (Supplementary Fig. 8b-c). We then calculated the intensity-based absolute quantification (iBAQ) values of the most predominant and statistically significant MBD-interacting proteins in both cell lines, which can be used to estimate the relative abundance. While we observe very similar complex composition between MBD2a-NuRD and MBD3a-NuRD, peptides shared between SALL1-4 proteins show a preferred interaction with the MBD2a-NuRD complex.

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Mus Musculus (mouse)

TISSUE(S): Embryonic Stem Cell

SUBMITTER: Tuncay Baubec

LAB HEAD: Tuncay Baubec

PROVIDER: PXD042407 | Pride | 2023-06-30

REPOSITORIES: Pride

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			Action	DRS
	20201112_002_S273659_IK_MS2_BioIP_MBD3A_1_Group_2.raw	Raw
	20201112_003_S273654_IK_MS2_BioIP_WT_2_Control.raw	Raw
	20201112_004_S273657_IK_MS2_BioIP_MBD2A_2_Group_1.raw	Raw
	20201112_007_S273660_IK_MS2_BioIP_MBD3A_2_Group_2.raw	Raw
	20201112_009_S273655_IK_MS2_BioIP_WT_3_Control.raw	Raw

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