Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Raphidocelis subcapitata strain:ATCC22662

ABSTRACT: Analysis of single nucleotide polymorphisms (SNPs) in Raphidocelis subcapitata

PROVIDER: PRJDB10240 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR238908_1.fastq.gz	Fastqsanger.gz
	DRR238908_2.fastq.gz	Fastqsanger.gz
	DRR238909_1.fastq.gz	Fastqsanger.gz
	DRR238909_2.fastq.gz	Fastqsanger.gz
	DRR238910_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Raphidocelis subcapitata

Project description:Raphidocelis subcapitata overview

| PRJNA857774 | ENA

SNP Analysis_ZZ_HH

Project description:single-nucleotide polymorphisms (SNPs) analysis

| OEX00000102 | NODE

SNP Analysis_Infant_A_B

Project description:Single-nucleotide polymorphisms (SNPs) analysis

| OEX00000104 | NODE

Analysis of Whole Genome Sequence and Genome-wide SNPs in Highly Inbred Pigs [Array]

Project description:We conducted a genome wide survey of single nucleotide polymorphisms (SNPs) using the porcine 60 K SNP chips on inbred pigs

2020-12-31 | GSE157934 | GEO

The impact of a drug transporter ABCG2 haplotype in molecular response of chronic myelogenous leukemia patients is modulated by imatinib dose

Project description:We analysed the impact of single nucleotide polymorphisms (SNPs) in drug transporter genes on the molecular response to imatinib, using 857 SNPs covering 94 drug transporter genes on 355 chronic phase chronic myeloid leukemia (CP-CML) patients.

2014-06-30 | GSE52107 | GEO

Raphidocelis subcapitata strain:NIES-35

Project description:Genome sequencing of Raphidocelis subcapitata NIES-35

| PRJDB5653 | ENA

AP-1 signaling modulates cardiac fibroblast stress responses

Project description:This study aimed to evaluate the genomic effects of single nucleotide polymorphisms (SNPs) at the 9p21 locus that are clinically correlated with heart disease. We performed ATAC sequencing on iPSC-derived cardiac fibroblasts and found large differences in AP-1 and GATA family motifs between cells containing the SNPs and those lacking them.

2023-12-13 | GSE225736 | GEO

CNV_Kasumi-1_U-2 OS_Patient

Project description:Arrays were used to determine the copy numbers of genomic regions harboring gene mutations and to identify heterozygous single nucleotide polymorphisms (SNPs) that were located close to these gene mutations. The gene mutations were identified through the COSMIC database and sequencing. The SNPs were used as control in single cell genetic analyses.

2016-10-10 | E-MTAB-4950 | biostudies-arrayexpress

Genome-wide association study of body weights in Hu sheep

Project description:Body weight (BW) is a critical economic trait for meat production in sheep. The current study aimed to perform a genome-wide association study (GWAS) to detect significant single-nucleotide polymorphisms (SNPs) that are associated with BW in Hu sheep.

2020-06-18 | GSE152717 | GEO

Transcription factor-SNP interactome for colorectal cancer risk loci

Project description:A core task to understand the consequences of non-coding single nucleotide polymorphisms (SNP) is to identify their genotype specific binding of transcription factor (TF). Here, we generate a large-scale TF-SNP interaction map for a selection of 116 colorectal cancer (CRC) risk loci and validated TF binding to 10 putatively functional SNPs. Our data further revealed TF binding complexity adjacent to the 116 risk loci, adding an additional layer of understanding to regulatory networks associated with CRC relevant loci.

2017-02-23 | PXD004435 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data