Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oryza sativa Japonica Group strain:Nipponbare

ABSTRACT: Transcriptome analysis of leaf or root samples in chitin-treated rice

PROVIDER: PRJDB11867 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR302295_1.fastq.gz	Fastqsanger.gz
	DRR302295_2.fastq.gz	Fastqsanger.gz
	DRR302296_1.fastq.gz	Fastqsanger.gz
	DRR302296_2.fastq.gz	Fastqsanger.gz
	DRR302297_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 180

Similar Datasets

Oryza sativa Japonica Group transcriptome sequencing

Project description:Phosphate starvation/sufficient rice seedling, root or shoot Pi-starvation or Pi-sufficient stresses responsible rice genes, including previously unannotated genes were identified by Illumina mRNA-seq technology. 53 million reads from Pi-starvation or Pi-sufficient root or shoot tissues were uniquely mapped to the rice genome, and these included 40574 RAP3 transcripts in root and 39748 RAP3 transcripts in shoot. We compared our mRNA-seq expression data with that from Rice 44K oligomicroarray, and about 95.5% (root) and 95.4% (shoot) transcripts supported by the array were confirmed expression both by the array and by mRNA-seq, Moreover, 11888 (root) and 11098 (shoot) RAP genes which were not supported by array, were evidenced expression with mRNA-seq. Furthermore, we discovered 8590 (root) and 8193 (shoot) previously unannotated transcripts upon Pi-starvation and/or Pi-sufficient.

2012-01-06 | E-MTAB-4302 | biostudies-arrayexpress

Oryza sativa Japonica Group cultivar:Nipponbare

Project description:RNA-seq of rice root colonised and non-colonised by nitrogen fixing bacterium Herbaspirillum seropedicae

| PRJNA489273 | ENA

Oryza sativa japonica Transcriptome or Gene expression

Project description:In this study, we examined the transcriptome dynamics within the matured fully expanded rice leaf and used strand-specific RNA sequencing to generate a comprehensive transcriptome dataset for the mature rice leaf. The rice Nipponbare (Oryza sativa l. japonica) seedlings were grown in the greenhouse. About 20 days after planting, the fully opened 4th leaves was cut it into seven 3-cm segments, from bottom to tip and labeled as sections 1 to 7, respectively. The tissues were immediately frozen in liquid nitrogen for total RNA extraction. Two biological replicates were collected for each section. Note: All samples in SRA were assigned the same sample accession (SRS685294). This is incorrect as there are different samples, hence âSource Nameâ was replaced with new values. Comment[ENA_SAMPLE] contains the original SRA sample accessions.

2015-08-16 | E-MTAB-4372 | biostudies-arrayexpress

Oryza sativa Japonica Group

Project description:Gene expression profiling of acute drought response in leaf and root of rice

| PRJNA167274 | ENA

Oryza sativa Indica Group cultivar:MR219

Project description:RNA sequencing of rice drought-treated leaf samples

| PRJNA964462 | ENA

Oryza sativa Japonica Group strain:Nipponbare

Project description:Rice chromosome 10 alternate assembly

| PRJNA13174 | ENA

Oryza sativa Japonica Group strain:Nipponbare

Project description:International Rice Genome Sequencing Project