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Chlorella variabilis strain:NC64A (ATCC 50528)

ABSTRACT: Multi-omics analysis of the symbiotic green algae, Chlorella variabilis, revealing the genetic basis of the obligate endosymbiotic lifestyle

PROVIDER: PRJDB12190 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR316154_1.fastq.gz	Fastqsanger.gz
	DRR316154_2.fastq.gz	Fastqsanger.gz
	DRR316155_1.fastq.gz	Fastqsanger.gz
	DRR316155_2.fastq.gz	Fastqsanger.gz
	DRR316156_1.fastq.gz	Fastqsanger.gz

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Chlorella variabilis strain:NC64A

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Project description:Green hydra (Hydra viridissima) harbors endosymbiotic Chlorella and have established a mutual relation. To identify the host hydra genes involved in the specific symbiotic relationship, transcriptomes of intact H. viridissima colonized with symbiotic Chlorella strain A99, aposymbiotic H.viridissima and H. viridissima artificially infected with other symbiotic Chlorella were compared by microarray analysis. The results indicated that genes involved in nutrition supply to Chlorella were upregulated in the symbiotic hydra. In addition, it was induced by supply of photosynthates from the symbiont to the host, suggesting cooperative metabolic interaction between the host and the symbiotic algae.

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Project description:Chlorella variabilis CCAP 211/84 grown in Af6, YPD and EG:JM media

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Global analysis of Chlorella variabilis NC64A mRNA profiles during the early phase of Paramecium bursaria chlorella virus-1 infection.

Project description:The PBCV-1/Chlorella variabilis NC64A system is a model for studies on interactions between viruses and algae. Here we present the first global analyses of algal host transcripts during the early stages of infection, prior to virus replication. During the course of the experiment stretching over 1 hour, about a third of the host genes displayed significant changes in normalized mRNA abundance that either increased or decreased compared to uninfected levels. The population of genes with significant transcriptional changes gradually increased until stabilizing at 40 minutes post infection. Functional categories including cytoplasmic ribosomal proteins, jasmonic acid biosynthesis and anaphase promoting complex/cyclosomes had a significant excess in upregulated genes, whereas spliceosomal snRNP complexes and the shikimate pathway had significantly more down-regulated genes, suggesting that these pathways were activated or shut-down in response to the virus infection. Lastly, we examined the expression of C. varibilis RNA polymerase subunits, as PBCV-1 transcription depends on host RNA polymerases. Two subunits were up-regulated, RPB10 and RPC34, suggesting that they may function to support virus transcription. These results highlight genes and pathways, as well as overall trends, for further refinement of our understanding of the changes that take place during the early stages of viral infection.

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Genome wide RNA-Seq of LOG OX1 and wildtype Chlorella variabilis cultures

Project description:To assess the significant downstream pathways affected by the overexpression of LONELY GUY in Chlorella, transcriptome analysis was carried out using RNA sequencing of three biological replicates each from WT and LOG OX1 at 14 dpi (1h before dark phase). The 14 dpi was chosen for the analysis because it was in the middle of the growth phase, where the slower growth of LOG OX1 was evident.

2021-02-24 | GSE162985 | GEO

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