Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oryza sativa Japonica Group

ABSTRACT: RNA-Seq reads of rice root under 2mM and 0.1mM nitrogen (NH4+) conditions

PROVIDER: PRJDB12563 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR327578_1.fastq.gz	Fastqsanger.gz
	DRR327578_2.fastq.gz	Fastqsanger.gz
	DRR327579_1.fastq.gz	Fastqsanger.gz
	DRR327579_2.fastq.gz	Fastqsanger.gz
	DRR327580_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Oryza sativa Japonica Group

Project description:RNA-Seq reads of rice shoot and root under 1.6mM (normal) and 0.4mM (low) nitrogen (NH4+) conditions

| PRJDB13104 | ENA

Oryza sativa Japonica Group transcriptome sequencing

Project description:Phosphate starvation/sufficient rice seedling, root or shoot Pi-starvation or Pi-sufficient stresses responsible rice genes, including previously unannotated genes were identified by Illumina mRNA-seq technology. 53 million reads from Pi-starvation or Pi-sufficient root or shoot tissues were uniquely mapped to the rice genome, and these included 40574 RAP3 transcripts in root and 39748 RAP3 transcripts in shoot. We compared our mRNA-seq expression data with that from Rice 44K oligomicroarray, and about 95.5% (root) and 95.4% (shoot) transcripts supported by the array were confirmed expression both by the array and by mRNA-seq, Moreover, 11888 (root) and 11098 (shoot) RAP genes which were not supported by array, were evidenced expression with mRNA-seq. Furthermore, we discovered 8590 (root) and 8193 (shoot) previously unannotated transcripts upon Pi-starvation and/or Pi-sufficient.

2012-01-06 | E-MTAB-4302 | biostudies-arrayexpress

The transcriptome of Serratia sp. ZM under different concentrations of (NH4)2SO4

Project description:The RNA-seq technique aims to identify genes that are differently expressed in low nitrogen (2mM (NH4)2SO4) and high nitrogen (10mM (NH4)2SO4) conditions.

2015-11-01 | GSE72965 | GEO

Oryza sativa Japonica Group

Project description:RNA-Seq analysis of rice under various environmental conditions

| PRJDB2600 | ENA

Oryza sativa Japonica Group

Project description:Differentially expressed genes under different stress conditions in rice

| PRJNA99405 | ENA

Oryza sativa Japonica Group

Project description:Gene expression profile of rice shoot and root in response to nitrogen deficiency treatment under phosphorus deficiency condition.

| PRJNA297877 | ENA

The transcriptome of Serratia sp. ZM under different concentrations of (NH4)2SO4

Project description:The RNA-seq technique aims to identify genes that are differently expressed in low nitrogen (2mM (NH4)2SO4) and high nitrogen (10mM (NH4)2SO4) conditions. Two groups of Serratia sp. ZM were analysed by us, low nitrogen group and high nitrogen group.

2015-11-01 | E-GEOD-72965 | biostudies-arrayexpress

Oryza sativa Japonica Group

Project description:Developmental and functional responses of rice root system to soil water and nutrient conditions

| PRJDB4462 | ENA

Oryza sativa Japonica Group

Project description:Pokkali rice root response upon F. pokkalii L1I52T colonization under tested seawater condition

| PRJNA1051288 | ENA

Oryza sativa Japonica Group

Project description:Transcript analysis of nitrogen response in rice

| PRJNA260890 | ENA