Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Human gut metagenome

ABSTRACT: Metagenomic analysis of appendectomy samples

PROVIDER: PRJDB8606 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR186372_1.fastq.gz	Fastqsanger.gz
	DRR186372_2.fastq.gz	Fastqsanger.gz
	DRR186373_1.fastq.gz	Fastqsanger.gz
	DRR186373_2.fastq.gz	Fastqsanger.gz
	DRR186374_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 50

Similar Datasets

human gut metagenome

Project description:Gut metagenome analysis, Parkinsons disease and history of appendectomy

| PRJDB9292 | ENA

human gut metagenome

Project description:metagenomic data from human fecal samples

| PRJDB4176 | ENA

human gut metagenome

Project description:Metagenomic samples are from human gut biome

| PRJNA214969 | ENA

human gut metagenome

Project description:Metagenomic sequencing of stool samples from Ghanaian individuals

| PRJNA529124 | ENA

Detection of antibiotic resistance genes in human gut microbiota

Project description:We used a DNA microarray chip covering 369 resistance types to investigate the relation of antibiotic resistance gene diversity with humans’ age. Metagenomic DNA from fecal samples of 123 healthy volunteers of four different age groups, i.e. pre-school Children (CH), School Children (SC), High School Students (HSS) and Adults (AD) were used for hybridization. The results showed that 80 different gene types were recovered from the 123 individuals gut microbiota, among which 25 were present in CH, 37 in SC, 58 in HSS and 72 in AD. Further analysis indicated that antibiotic resistance genes in groups of CH, SC and AD can be independently clustered, and those ones in group HSS are more divergent. The detailed analysis of antibiotic resistance genes in human gut is further described in the paper DNA microarray analysis reveals the antibiotic resistance gene diversity in human gut microbiota is age-related submitted to Sentific Reports

2014-01-16 | GSE54070 | GEO

human gut metagenome

Project description:Draft bacterial assemblies from metagenomic sequencing of human stool samples

| PRJNA277012 | ENA

human gut metagenome

Project description:Metagenomic analysis of infant stool sample

| PRJNA60717 | ENA

human gut metagenome

Project description:Shotgun metagenomic sequencing of stool samples from two South African cohorts

| PRJNA678454 | ENA

Reanalysis of dataset PXD005780: “Relating human gut metagenome and metaproteome”

Project description:This project contains raw data, intermediate files and results is a re-analysis of the publicly available dataset from the PRIDE dataset PXD005780. The RAW files were processed using ThermoRawFileParser, SearchGUI and PeptideShaker through standard settings (see ‘Data Processing Protocol’). This reanalysis work is part of the MetaPUF (MetaProteomics with Unknown Function) project, which is a collaboration between EMBL-EBI and the University of Luxembourg. The dataset was selected with the following conditions: 1. It has been made publicly available in PRIDE and focuses on metaproteomics of the human gut; 2. The corresponding metagenomics assemblies were also available from ENA (European Nucleotide Archive) or MGnify. The processed peptide reports for each sample are available to view at the contig level on the MGnify website. In total, the reanalysis identified 15,417 unique proteins from 15 samples.

2022-05-04 | PXD032303 | Pride

human gut metagenome

Project description:Metagenomic analysis of adult CF and control stool

| PRJNA438847 | ENA