Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis halleri

ABSTRACT: RNA-seq, TuMV sequences in a natural population

PROVIDER: PRJDB8622 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR190488.fastq.gz	Fastqsanger.gz
	DRR190489.fastq.gz	Fastqsanger.gz
	DRR190490.fastq.gz	Fastqsanger.gz
	DRR190491.fastq.gz	Fastqsanger.gz
	DRR190492.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

Arabidopsis halleri subsp. gemmifera

Project description:Diel analyses of H3K27me3 and H3K4me3 in a natural population of Arabidopsis halleri

| PRJDB7593 | ENA

Arabidopsis halleri subsp. gemmifera

Project description:Seasonal analyses of H3K27me3 and H3K4me3 in a natural population of Arabidopsis halleri

| PRJDB3311 | ENA

Roles and Programming of Arabidopsis ARGONAUTE Proteins During Turnip Mosaic Virus Infection

Project description:AGO protein immunoprecipitation was combined with high-throughput sequencing of associated small RNAs. AGO2, AGO10, and to a lesser extent AGO1 were shown to associate with siRNAs derived from silencing suppressor (HC-Pro)-deficient TuMV-AS9, but not with siRNAs derived from wild-type TuMV. Co-immunoprecipitation and small RNA sequencing revealed that viral siRNAs broadly associated with wild-type HC-Pro during TuMV infection. These results support the hypothesis that suppression of antiviral silencing during TuMV infection, at least in part, occurs through sequestration of virus-derived siRNAs away from antiviral AGO proteins by HC-Pro.

2015-04-06 | GSE64911 | GEO

Arabidopsis arenosa, Arabidopsis halleri

Project description:Whole genome re-sequencing of natural Arabidopsis arenosa and Arabidopsis halleri populations

| PRJNA506705 | ENA

Arabidopsis halleri subsp. halleri

Project description:Raw sequence reads and transcriptome assembly of a metallicolous Polish population of Arabidopsis halleri subsp. halleri

| PRJNA388549 | ENA

Project description:TuMV RNA-seq

| PRJNA764554 | ENA

The effect of TuMV on translation initiation in Arabidopsis

Project description:Arabidopsis ecotype Col-0 expressing RPL18 fused to His & Flag epitopes (RPL18-HF) under 35S control was used to discern the effects of Turnip mosaic virus (TuMV) infection on host translation initiation. Plants were grown in LC-1 soil in 12 hour days and infected by TuMV-GFP or mock-inoculated just prior to sending up bolts. Samples were taken from rosette leaves 10 days after inoculation. Only tissue fluorescing GFP was selected from the virus-infected samples. Similar tissue was sampled from mock-infected leaves. FLAG antibody was used to isolate RPL18-HF. The RNA co-immunoprecipitated with RPL18-HF is fully translation-initiated. This translation-initiated RNA, also referred to as polysomal RNA, was isolated and compared to total RNA under both mock and TuMV-infected states to find TuMV-induced changes in host translation initiation. ****[PLEXdb(http://www.plexdb.org) has submitted this series at GEO on behalf of the original contributor, Jackson Moeller. The equivalent experiment is AT42 at PLEXdb.]

2011-03-11 | GSE20278 | GEO

Arabidopsis halleri subsp. gemmifera

Project description:RNA-seq in Japanese wild Arabidopsis harreli

| PRJDB3597 | ENA

Involvement of Arabidopsis TUTases in viral RNA uridylation

Project description:Using 3' RACE-seq method, we analyzed the impact of URT1 and/or HESO1 inactivation on the uridylation of GFLV, TuMV and TCV RNAs in Arabidopsis.

2023-04-27 | GSE212293 | GEO

Accumulation of TuMV-derived siRNAs in aerial parts of Arabidopsis thaliana plants at 7 and 10 dpi

Project description:At 7 and 10 dpi with wild type TuMV or buffer (mock) whole plants (root not included) were collected and total RNA extracted for sRNA sequencing using the Illumina plataform.

2010-04-09 | GSE20197 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data