Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Globodera pallida metagenetics

ABSTRACT: 300 bp paired end MiSeq sequencing of a 315 bp amplicon from G. pallida mitochondrial Cytochrome B sequence amplified from approx 1000 samples each with unique barcode pair appended to primers.

PROVIDER: PRJEB10033 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR973487_1.fastq.gz	Fastqsanger.gz
	ERR973487_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Globodera pallida transcriptomics

Project description:As part of the Globodera pallida (potato cyst nematode) genome project weare profiling the transcriptome of the parasite across its life cycle usingRNA-Seq. . This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2012-11-28 | E-ERAD-55 | biostudies-arrayexpress

Globodera pallida

Project description:Globodera pallida overview

| PRJNA714713 | ENA

Globodera pallida

Project description:Genomic Analyses of Globodera pallida, A Quarantine Agricultural Pathogen in Idaho

| PRJNA679610 | ENA

Globodera pallida genomic sequencing

Project description:Globodera pallida genomic sequencing

| PRJEB2242 | ENA

Globodera pallida strain:D383

Project description:Globodera pallida strain:D383 Genome sequencing and assembly

| PRJNA764088 | ENA

Globodera pallida isolate:Newton

Project description:Globodera pallida isolate:Newton Genome sequencing and assembly

| PRJNA702104 | ENA

RNAseq of gall-enriched tissue of Solanum tuberosum infected by Globodera pallida

Project description:We compared the gene expression of Solanum tuberosum genotype SH infected with either Globodera pallida D383, E400 or mock infected. After we (mock)-infected the plants we collected gall-enriched tissue 3 and 6 days post infection. The transcriptomes were measured using RNA-seq. The aim of the experiment was to determine how the plant immune response developed after activation of the resistance gene Gpa2 by D383, as E400 is able to overcome that resistance.

2022-04-30 | E-MTAB-11646 | biostudies-arrayexpress

Globodera pallida genomic sequencing

Project description:Sequencing different worm populations of Globodera pallida for assembly and analysis.

| PRJEB123 | ENA

Transcriptome and gene expression analysis during flower blooming in Rosa chinensis ‘Pallida’

Project description:Rosa chinensis ‘Pallida’ (Rosa L.) is one of the most important ancient rose cultivars originating from China. It contributed the ‘tea scent’ trait to modern roses. However, little information is available on the gene regulatory networks involved in scent biosynthesis and metabolism in Rosa. In this study, the transcriptome of R. chinensis ‘Pallida’ petals at different developmental stages, from flower buds to senescent flowers, was investigated using Illumina sequencing technology. De novo assembly generated 89,614 clusters with an average length of 428 bp. Based on sequence similarity search with known proteins, 62.9% of total clusters were annotated. Out of these annotated transcripts, 25,705 and 37,159 sequences were assigned to gene ontology and clusters of orthologous groups, respectively. The dataset provides information on transcripts putatively associated with known scent metabolic pathways. Digital gene expression (DGE) was obtained using RNA samples from flower bud, open flower and senescent flower stages. Comparative DGE and quantitative real time PCR permitted the identification of five transcripts encoding proteins putatively associated with scent biosynthesis in roses. The study provides a foundation for scent-related genes discovery in roses.

2015-01-01 | GSE54486 | GEO

Leptotila pallida

Project description:Leptotila pallida

| PRJNA853001 | ENA