Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Streptomyces sp. MnatMP-M17 Genome sequencing and assembly

PROVIDER: PRJEB14579 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	FMDK01.dat.gz	Other
	FMDK01.fasta.gz	Fasta.gz
	FMDK01.master.dat	Other
	FMDK01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Streptomyces sp. MnatMP-M17

Project description:Streptomyces sp. MnatMP-M17 Genome sequencing and assembly

| PRJNA319237 | ENA

Streptomyces sp. MnatMP-M27

Project description:Streptomyces sp. MnatMP-M27 Genome sequencing and assembly

| PRJNA319224 | ENA

Project description:Streptomyces sp. MnatMP-M27 Genome sequencing and assembly

| PRJEB14580 | ENA

Streptomyces sp. MnatMP-M77

Project description:Streptomyces sp. MnatMP-M77 Genome sequencing

| PRJNA163021 | ENA

Project description:Streptomyces sp. MnatMP-M77

| PRJEB14426 | ENA

Amycolatopsis sp. MnatMP-M74

Project description:Amycolatopsis sp. MnatMP-M74 genome sequencing

| PRJNA337425 | ENA

Pollutimonas sp. M17

Project description:Pollutimonas sp. M17 Genome sequencing and assembly

| PRJNA887331 | ENA

Genome-wide binding site profiling of NdgR in Streptomyces coelicolor

Project description:We identified genome-wide binding regions of NdgR in Streptomyces coelicolor using chromatin immunoprecipitation sequencing (ChIP-seq). We constructed 6×myc-tagged NdgR strain using homologous recombination with myc-tagging vector. Analysis of the sequencing data aligned to Streptomyces coelicolor genome database (NC_003888).

2014-12-29 | GSE59010 | GEO

Alkalibacter mobilis strain:M17 DMB

Project description:Alkalibacter sp. M17 DMB Genome sequencing and assembly

| PRJNA676094 | ENA

Proteomics analysis of streptomyces sp. MBT76 demonstrates the production of qinichelins, new mixed catecholate-hydroxamate siderophores

Project description:Actinomycete genomes contain a plethora of orphan gene clusters encoding unknown secondary metabolites, and representing a huge unexploited pool of chemical diversity. The explosive increase in genome sequencing and the massive advance of bioinformatic tools have revolutionized the rationale for natural product discovery from actinomycetes. In this context, we applied a genome mining approach to discover a group of unique catecholate-hydroxamate siderophores termed as qinichelins from Streptomyces sp. MBT76. Quantitative proteomics statistically correlated a gene cluster of interest (qch) to its unknown chemotype (qinichelin), after which structural elucidation of isolated qinichelin was assisted by bioinformatics analysis and verified by MS2 and NMR experiments. Strikingly, intertwined functional crosstalk among four separately located gene clusters was implicated in the biosynthesis of qinichelins.

2018-10-24 | PXD006577 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data