Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq analysis of Helicobacter cinaedi ATCC BAA-847 under microaerobic and aerobic culture conditions

ABSTRACT: RNA-seq analysis of Helicobacter cinaedi ATCC BAA-847 under microaerobic and aerobic culture conditions

PROVIDER: PRJEB15245 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR1597640_1.fastq.gz	Fastqsanger.gz
	ERR1597640_2.fastq.gz	Fastqsanger.gz
	ERR1597650_1.fastq.gz	Fastqsanger.gz
	ERR1597650_2.fastq.gz	Fastqsanger.gz
	ERR1597660_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 78

Similar Datasets

RNA-seq analysis of Helicobacter cinaedi ATCC BAA-847 under microaerobic and aerobic culture conditions

Project description:Helicobacter cinaedi is an emerging bacterial pathogen of immunosuppressed individuals. The species is traditionally thought to require an H2-enhanced microaerobic atmosphere for growth, although it can proliferate under aerobic conditions when co-cultured with epithelial monolayers or supplemented with certain metabolites (notably, L-lactate). The goal of this experiment was to assess the global transcription changes that occur in the H. cinaedi type strain (ATCC BAA-847) under various media and atmospheric conditions. These include bacterial monoculture, as well as co-culture with Caco-2 intestinal epithelial cells. In total, Illumina mRNA-seq (stranded, paired-end) was performed on H. cinaedi grown under 9 in vitro culture conditions (4-5 biologic replicates per condition).

2016-09-19 | E-MTAB-5062 | biostudies-arrayexpress

Helicobacter cinaedi CCUG 18818 = ATCC BAA-847

Project description:Complete genome sequence of Helicobacter cinaedi ATCC BAA-487

| PRJDB113 | ENA

Complete genome sequence of Helicobacter cinaedi type strain ATCC BAA-847.

Project description:Here we report the completely annotated genome sequence of the Helicobacter cinaedi type strain (ATCC BAA-847), which is an emerging pathogen that causes cellulitis and bacteremia. The genome sequence will provide new insights into the diagnosis, pathogenic mechanisms, and drug resistance of H. cinaedi.

| S-EPMC3458690 | biostudies-literature

RNAseq analysis of microaerobic and aerobic cultures of Pseudomonas extremaustrali

Project description:RNAseq of microaerobic and aerobic cultures in LB+KNO3 of the Antarctic bacterium Pseudomonas extremaustralis

2017-11-17 | E-MTAB-5440 | biostudies-arrayexpress

Transcriptomic measurement of Escherichia coli under aerobic and microaerobic conditions

Project description:A total of 4388/4385 genes' transcripts (under aerobic/microaerobic condition, respectively) were identified. Among them, 105 and 71 transcripts were confidently determined to be up- or down-regulated by more than 4 folds with false discovery rate (FDR) p value more than 1, respectively. Additionally, 49 known regulatory non-coding small RNAs (sRNAs) were detected, and 18 sRNAs were differentially abundant (more than 1.5 fold-change). Functional characterizations were revealed that the major differential expression genes were involved in (i) acid response/cation homeostasis (ex: gadAXW, and hdeAB-yhiD operons), (ii) cell adhesion/biofilm formation (ex; fimAICDFGH, and csgDEFG operons), (iii) electron transportation (ex: cydAB, and nrdHIEF operons), (iv) ion transporter (ex: efeU, and efeOB operons), (v) Iron-sulfur cluster assembly (ex: iscRSUA and sufABCDSE operons), and (vi) the undoubtable anaerobic respiration/fermentation (ex: hyaABCDEF and hybOABCDEFG operons) & aerobic respiration (ex: sdhDAB and sucABCDSE operons).

2022-03-15 | GSE189154 | GEO

RNAseq analysis of microaerobic and aerobic cultures of Pseudomonas extremaustrali

Project description:RNAseq analysis of microaerobic and aerobic cultures of Pseudomonas extremaustrali

| PRJEB20035 | ENA

Transcriptomic measurement of Escherichia coli under aerobic and microaerobic conditions

Project description:Transcriptomic measurement of Escherichia coli under aerobic and microaerobic conditions

| PRJNA781662 | ENA

Transcriptome profile of wild type Azoarcus sp. BH72 grown under microaerobic condition (0.3% oxygen) compared with that grown under aerobic condition (21% oxygen), both in presence of combined nitrogen source, respectively

Project description:Low oxygen tensions are often encountered in flooded soils of rice fields by root-associated, strictly respiratory, beta proteobacterium, Azoarcus sp. BH72 which fixes nitrogen only under microaerobic condition. In this study, genome wide oligonucleotide microarrays were used compare the global transcription profile of Azoarcus sp. BH72 under microaerobic condition with cells grown under aerobic condition, both with ammonia as sole nitrogen source. The outcome of this study will provide a better insight about the establishment of this endophyte in the microaerobic environment, probably prevailing inside of the rice root niche .

2014-09-13 | GSE61387 | GEO

2014-09-13 | E-GEOD-61387 | biostudies-arrayexpress

Helicobacter cinaedi

Project description:Genomic analysis of Helicobacter cinaedi

| PRJDB6556 | ENA