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Rapid identification disease resistance genes from Solanum americanum by resistance gene enrichment sequencing (RenSeq)

ABSTRACT: Cloning disease resistance genes against late blight of potato

PROVIDER: PRJEB15291 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR1607940_1.fastq.gz	Fastqsanger.gz
	ERR1607940_2.fastq.gz	Fastqsanger.gz
	ERR1607941_1.fastq.gz	Fastqsanger.gz
	ERR1607941_2.fastq.gz	Fastqsanger.gz
	ERR1607934_1.fastq.gz	Fastqsanger.gz

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Potato Gene Expression Associated with the RB-mediated Broad-Spectrum late blight resistance

2009-10-01 | GSE13341 | GEO

Potato Gene Expression Associated with the RB-mediated Broad-Spectrum late blight resistance

Project description:Late blight, caused by the oomycete Phytophthora infestans, is one of the most damaging potato diseases. Genetic resistance is one of the most effective means to control the destruction caused by this pathogen. Transgenic potato lines harboring a resistance gene, RB, confer broad-spectrum, rate-reducing late blight resistance. A microarray approach was used to understand what genes are manipulated in the potato background after the addition of the RB gene that contribute to the late blight resistant phenotype. Keywords: Time course, disease state analysis CRD (3x2x2) Split-Split Plot: 3 sampling time points after inoculation (2, 5, 10 hours), Two genotypes (Katahdin with and without the RB gene), Inoculation with P. infestans or mock inoculation with water. 48 arrays were hybridized in total; 12 in each biological replicate. Each genotype with the mock and late blight inoculated samples was hybridized on two arrays using a dye-swap procedure. Each genotype had a total of 6 arrays across the three sampling time points.

2010-05-22 | E-GEOD-13341 | biostudies-arrayexpress

Solanum tuberosum

Project description:Quantitative resistance response to late blight in potato

| PRJNA101195 | ENA

Time-course Investigation of Phytophthora infestans infection of potato leaf from three cultivars by quantitative proteomics

Project description:Potato Late blight is one the most important crop diseases worldwide. Even though potato has been studied for many years, the potato disease late blight still has a huge negative effect on the potato production. A total of three commercially available field potato cultivars of different resistance to late blight infection: Kuras (moderate), Sarpo Mira (highly resistant) and Bintje (very suseptable) under controlled green house growing conditions innoculated with a diversity of P. infestans populations. We used label-free quantitative proteomics to investigate the infection with P. infestans in a time-course study over 258 hours. Several key issues limits proteome analysis of potato leaf tissue4–6. Firstly, the immense complexity of the plant proteome which is further complicated by the presence of highly abundant proteins, such as ribulose bisphosphate carboxylase/oxygenase (RuBisCO). Secondly, plant leaf and potato in particular contain abundant levels amounts of phenols and polyphenols which hinder or, unless precautions are taken, completely prevent a successful protein extraction.

2016-01-05 | PXD002767 | Pride

Solanum tuberosum cultivar:Potato wild species and varieties

Project description:Transcriptome sequencing of potato for late blight resistance

| PRJNA836253 | ENA

Solanum tuberosum cultivar:Potato wild species

Project description:Transcriptome analysis for late blight resistance in wild potato species

| PRJNA744887 | ENA

Solanum tuberosum

Project description:Potato Gene Expression Associated with the RB-mediated Broad-Spectrum late blight resistance

| PRJNA109863 | ENA

Three potato cultivars infected by Phytophthora infestans

Project description:RNA-sequencing data of three potato cultivars (Deisree, Sarpo Mira and SW92-1015) with different susceptibility to Phytopthora infestans causing late blight 24 hours post P. infestans infection

2014-06-26 | E-MTAB-1712 | biostudies-arrayexpress

Project description:Transcriptome of potato late blight isolates

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Transcriptome changes in leaves of the DEFENSE NO DEATH 1 (DND1) silenced potato plants

Project description:Silencing of DND1 in potato leads to resistance to late blight, powdery mildew and Botrytis cinerea. At the same time, however, it reduces plant growth and causes leaf necrosis. To get knowledge on the molecular events behind the pleiotropic effect of DND1 downregulation in potato transcriptome analysis were performed on three DND1 silenced lines in comparison with the potato cultivar ‘Désirée’ as a wild-type.

2024-10-22 | E-MTAB-13824 | biostudies-arrayexpress

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