Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Clinical HCMV

ABSTRACT: Human cytomegalovirus sequences from clinical samples

PROVIDER: PRJEB22095 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2092971_1.fastq.gz	Fastqsanger.gz
	ERR2092971_2.fastq.gz	Fastqsanger.gz
	ERR2091819_1.fastq.gz	Fastqsanger.gz
	ERR2091819_2.fastq.gz	Fastqsanger.gz
	ERR2114781_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

HHV-5 (HCMV) genomes

Project description:Sequences of complete human cytomegalovirus genomes from infected cell cultures and clinical specimens

| PRJEB2153 | ENA

MicroRNA targetome analysis during HCMV infection

2014-12-03 | GSE63797 | GEO

Time course analysis of response to HCMV infection

Project description:The effect of human cytomegalovirus infection on cellular mRNA accumulation was analyzed by gene chip technology over a 48h time course Keywords: time-course

2003-09-25 | GSE675 | GEO

MicroRNA targetome analysis during HCMV infection

Project description:To elucidate miRNA-mediated temporal crosstalk during productive infection, we identified genome-wide miRNA target sites using Argonaute-crosslinking and immunoprecipitation followed by high-throughput sequencing (AGO-CLIPseq) in human cytomegalovirus (HCMV)-infected cells and evaluated the targeting efficacy by applying our new AGO-CLIPseq enrichment (ACE)-scoring algorithm. To uncover the miRNA targetome in uninfected or infected human foreskin fibroblasts with HCMV (24, 48 and 72 post-infection hour) were subjected to take AGO-CLIPseq as well as mRNAseq/smallRNAseq.

2014-12-03 | E-GEOD-63797 | biostudies-arrayexpress

RNA-Induced Silencing Complex-associated RNA in MRC-5 cells transfected with hcmv-miR-UL22A-5p

Project description:Investigation of mRNA targets of the human cytomegalovirus miRNA UL22A-5p

2015-04-08 | GSE64503 | GEO

Project description:Human cytomegalovirus by clinical metagenomics

| PRJNA886483 | ENA

Analysis of Roquin targetome during HCMV infection

Project description:To investigate how Roquin regulates cellular transcripts during Human cytomegalovirus (HCMV) infection, we examined the levels of cellular transcripts in cells treated control or Roquin-targeting siRNA during HCMV replication. Also, we performed Roquin crosslinking and immunoprecipitation followed by high-throughput sequencing (Roquin CLIP-seq) in HCMV-infected cells to identify which transcripts are directly bound by Roquin.

2019-08-15 | GSE132081 | GEO

HHV-5 (HCMV) genomes

Project description:High-throughput sequence analysis of variants of human cytomegalovirus strains Towne and AD169

| PRJEB2152 | ENA

HCMV paediatric cases

Project description:Longitudinal whole genome sequencing of cytomegalovirus from children

| PRJEB12814 | ENA

Expression Data From HCMV-Infected Human Monocytes Study 2

Project description:Human cytomegalovirus induces a pro-inflammatory monocyte following infection. To begin to address how HCMV induces these rapid changes in infected monocytes, we examined the transcriptome of infected monocytes. Global transcriptional profiling using cDNA microarrays revealed a significant number of pro-inflammatory genes were upregulated within 4 hours post infection. Keywords: Disease State

2008-05-13 | GSE11408 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data