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RNA-seq of Candida albicans Hda1 complex mutants (hda1∆∆, hda2∆∆ and hda3∆∆) and wildtype SN152 in yeast and hyphae inducing conditions

ABSTRACT: RNA-seq of Candida albicans Hda1 complex mutants (hda1∆∆, hda2∆∆ and hda3∆∆) and wildtype SN152 in yeast and hyphae inducing conditions

PROVIDER: PRJEB27358 | ENA |

REPOSITORIES: ENA

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RNA-seq of Candida albicans Hda1 complex mutants (hda1∆∆, hda2∆∆ and hda3∆∆) and wildtype SN152 in yeast and hyphae inducing conditions

Project description:Candida albicans is a normally commensal yeast which becomes pathogenic to human hosts under some conditions and specifically in immune compromised individuals. This contributes to a global health crisis of fungal disease. This yeast can morphologically adapt to the environment by reversibly developing hyphae which allows for traversing of tissue. Histone deacetylase 1 (Hda1) is involved in this transition as it is established that the deletion of the associated gene stunts this morphological switch. In Saccharomyces cerevisiae this protein complexes with two similarly named proteins: Hda2 and Hda3. Here we evaluate Candida albicans strains with mutations in the genes that code for these proteins. The strains are grown in yeast (YPD 30 °C) and hyphae (RPMI 37 °C) -inducing conditions for 90 minutes prior to RNA extraction. After alignment by HISAT2, the homozygous mutants are then individually compared to wildtype (matching growth conditions) using DESeq2.

2023-03-01 | E-MTAB-6920 | biostudies-arrayexpress

Genome-wide analysis of H3K56ac across C. albicans genome in hyphae-inducing conditions

Project description:Genome-wide analysis of H3K56ac across C. albicans genome in hyphae-inducing conditions

| PRJEB66481 | ENA

Transcriptional profiling of Candida albicans SC5314, hgc1Δ and cph1Δ/efg1Δ in yeast-and hyphae-inducing conditions at two time points.

Project description:Goal of this study was to determine metabolic adaptation processes in C. albicans associated to hyphal morphogenesis. Accessory to the metabolic profiling the corresponding transcriptome was investigated. To identify media-specific and general adaptation three different hyphae stimuli were used (M199 pH 7.4, Human serum and N-Aectylglucosamine) were used and compared again two respective yeast conditions (SD and M199 pH 4). Two filamentation-affected mutant strains were included - lacking either two central regulators of filamentation (cph1Δ/efg1Δ) or a downstream effector (hgc1Δ) - for the identification of specfic morphotype-dependent metabolic adaptation in repsonse to hyphae stimuli. Two different time points (90 min and 240 min after transition to test medium) were investigated to define the progression of the examined adaptation processes.

2022-10-14 | GSE202941 | GEO

RNA-seq of Candida albicans in hyphae inducing conditons treated or not with nicotinamide

Project description:RNA-seq of Candida albicans in hyphae inducing conditons treated or not with nicotinamide

| PRJEB66135 | ENA

Effect of fludioxonil treatment on candida albicans SC5314

Project description:Comparison of Candida albicans SC5314 treated with fludioxonil for 30 min and untreated controls under hyphae-inducing conditions

2012-10-01 | GSE39715 | GEO

Genome-wide analysis of H3K56ac across C. albicans genome in hyphae-inducing conditions

Project description:In the present study, we investigated whether the acetylation of H3K56, known as relevant for C. albicans virulence, might affect the Candida-macrophages interaction. Therefore, by the mean of the non-specific Hst3 inhibitor nicotinamide (NAM), we evaluated whether the alteration of H3K56 acetylation would affect the secretion of soluble factors by C. albicans. In particular, we tested the effect of the two different Candida growth-conditioned media (with and without NAM) on murine macrophages at the morphological and functional levels. In addition, we analyzed transcriptome modifications and genome enrichment of H3K56ac in the same experimental conditions.

2024-07-30 | E-MTAB-13387 | biostudies-arrayexpress

Transcriptional profiling of Candida albicans SC5314, hgc1Δ and cph1Δ/efg1Δ in yeast-and hyphae-inducing conditions at two time points.

Project description:Transcriptional profiling of Candida albicans SC5314, hgc1Δ and cph1Δ/efg1Δ in yeast-and hyphae-inducing conditions at two time points.

| PRJNA837807 | ENA

Effect of fludioxonil treatment on candida albicans SC5314

Project description:Comparison of Candida albicans SC5314 treated with fludioxonil for 30 min and untreated controls under hyphae-inducing conditions 3 biologically independent replicates of a reference sample (U30) and fludioxonil treatment (F30) each

2012-10-01 | E-GEOD-39715 | biostudies-arrayexpress

Candida albicans SFL1 and SFL2 transcriptomics

Project description:Expression profiling of C. albicans homozygous sfl1 and sfl2 mutants expressing (sfl1-CaEXP-SFL1-HA3, sfl2-CaEXP-SFL2-HA3) or not (sfl1-CaEXP, sfl2-CaEXP, vector only control) SFL1-HA3 and SFL2-HA3, respectively, under hyphae-inducing conditions (Lee's medium at 37 degrees C).

2013-06-15 | E-MEXP-3779 | biostudies-arrayexpress

The Ndr/LATS kinase Cbk1 regulates a specific subset of Ace2 functions and suppresses the hyphae-to-yeast transition in Candida albicans

Project description:The Regulation of Ace2 and Morphogenesis (RAM) pathway is an important regulatory network in the human fungal pathogen Candida albicans. The RAM pathway’s two most well-studied components, the NDR/Lats kinase Cbk1 and its putative substrate, the transcription factor Ace2, have a wide range of phenotypes and functions. It is not clear, however, which of these functions are specifically due to the phosphorylation of Ace2 by Cbk1. To address this question, we first compared the transcriptional profiles of CBK1 and ACE2 deletion mutants. This analysis indicates that, of the large number of genes whose expression is affected by deletion of CBK1 and ACE2, only 5.5% of those genes are concordantly regulated. Our data also suggest that Ace2 directly or indirectly represses a large set of genes during hyphal morphogenesis. Second, we generated strains containing ACE2 alleles with alanine mutations at the Cbk1 phosphorylation sites. Phenotypic and transcriptional analysis of these ace2 mutants indicates that, as in Saccharomyces cerevisiae, Cbk1 regulation is important for daughter cell localization of Ace2 and cell separation during yeast phase growth. In contrast, Cbk1 phosphorylation of Ace2 plays a minor role in C. albicans yeast-to-hyphae transition. We have, however, discovered a new function for the Cbk1-Ace2 axis. Specifically, Cbk1 phosphorylation of Ace2 prevents the hyphae-to-yeast transition. To our knowledge, this is one of the first regulators of the C. albicans hyphae-to-yeast transition to be described. Finally, we present an integrated model for the role of Cbk1 in the regulation of hyphal morphogenesis in C. albicans.

2020-08-26 | GSE155450 | GEO

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