Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Whole-genome sequence analysis of extended spectrum beta-lactamase producing E. coli strains from poultry and humans

PROVIDER: PRJEB31984 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3265000_1.fastq.gz	Fastqsanger.gz
	ERR3265000_2.fastq.gz	Fastqsanger.gz
	ERR3265010_1.fastq.gz	Fastqsanger.gz
	ERR3265010_2.fastq.gz	Fastqsanger.gz
	ERR3265020_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 72

Similar Datasets

Project description:Evolution of extended-spectrum beta-lactamase-producing Escherichia coli

| PRJNA874473 | ENA

Project description:Extended-spectrum Beta-lactamase-producing Escherichia coli among Humans, Beef Cattle and Abattoir Environments

| PRJNA810423 | ENA

Project description:Genome sequences of extended-spectrum beta-lactamase producing Escherichia coli.

| PRJNA767840 | ENA

ESBL-producing E.coli isolated from patients in Thailand

Project description:Extended-Spectrum Beta-lactamase -producing Escherichia coli strains isolated from diarrhea patients hospitalized in Thailand

| PRJEB34463 | ENA

Extended Spectrum Beta-Lactamase-producing Enterobacteriaceae

Project description:Extended Spectrum Beta-Lactamase-producing Enterobacteriaceae Raw sequence reads

| PRJNA476828 | ENA

SoM study

Project description:Whole genome multilocus sequence typing of extended-spectrum beta-lactamase-producing Enterobacteriaceae

| PRJEB15226 | ENA

Escherichia coli strain:INF191/17/A

Project description:Draft genome of extended-spectrum beta-lactamase producing Escherichia coli INF191/17/A

| PRJNA752944 | ENA

RNAseq transcriptome analysis of K. pneumoniae MS6671 and E. coli MS8345 treated with PBT2

Project description:The emergence of colistin resistance in carbapenem-resistant and extended-spectrum ß-lactamase (ESBL)-producing bacteria is a significant threat to human health, and new treatment strategies are urgently required. Here we investigated the ability of the safe-for-human use ionophore PBT2 to restore antibiotic sensitivity in several polymyxin-resistant, ESBL-producing, carbapenem resistant Gram-negative human pathogens. PBT2 was observed to resensitize Klebsiella pneumoniae, Escherichia coli, Acinetobacter baumannii, and Pseudomonas aeruginosa to last-resort polymyxin class antibiotics, including a ‘next generation’ polymyxin derivative, FADDI-287. To gain additional insight into the potential mechanism of action of PBT2, we analyzed the transcriptome of K. pneumoniae and E. coli in the presence of sub-inhibitory concentrations of PBT2. Treatment with PBT2 was associated with multiple stress responses in both K. pneumoniae and E. coli. Significant changes in the transcription of transition metal ion homeostasis genes were observed in both strains.

2019-06-13 | GSE132637 | GEO

Project description:Extended-Spectrum Beta-Lactamase gene sequencing

| PRJNA825737 | ENA

Transcriptional alterations of virulence-associated genes in extended spectrum beta-lactamase (ESBL)-producing uropathogenic Escherichia coli during morphologic transitions induced by ineffective antibiotics

Project description:The present study examines changes in global gene expression patterns and in virulence factor-associated genes in an extended spectrum beta-lactamase (ESBL)-producing UPEC (ESBL019) during the morphologic transitions induced by an ineffective antibiotic and in the presence of human primary bladder epithelial cells. The morphological shifts induced by ineffective antibiotics are associated with significant transcriptional virulence alterations in ESBL-producing UPEC, which may affect survival and persistence in the urinary tract.

2017-06-06 | GSE99661 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data