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Whole-genome sequences of multidrug-resistant Escherichia coli in Rabat, Morocco

ABSTRACT: Whole-genome sequences of multidrug-resistant Escherichia coli in Rabat, Morocco

PROVIDER: PRJEB42611 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR5167490_1.fastq.gz	Fastqsanger.gz
	ERR5167490_2.fastq.gz	Fastqsanger.gz
	ERR5167500_1.fastq.gz	Fastqsanger.gz
	ERR5167500_2.fastq.gz	Fastqsanger.gz
	ERR5167491_1.fastq.gz	Fastqsanger.gz

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Project description:Treatment of urinary tract infections is today a challenge due to the increasing prevalence of multidrug-resistant ESBL-producing uropathogenic Escherichia coli (UPEC). There is an urgent need for new treatment strategies for multidrug-resistant UPEC and preferably with targets that have low potential for development of resistance. Carbon monoxide-releasing molecules (CORMs) are novel and potent antibacterial agents. The present study examines the transcriptomic targets of CORM-2 in a multidrug-resistant ESBL-producing UPEC isolate (ESBL7) in response to a single exposure to CORM-2 and after repeated exposure to CORM-2. The bacterial viability and minimal inhibitory concentration (MIC) were also examined after repeated exposure to CORM-2. Microarray analysis revealed that a wide range of processes were affected by CORM-2, including a general trend of down-regulation in energy metabolism and biosynthesis pathways and up-regulation of the SOS response and DNA repair. Several genes involved in virulence (ibpB), antibiotic resistance (marAB, mdtABC) and biofilm formation (bhsA, yfgF) were up-regulated, while some genes involved in virulence (kpsC, fepCEG, entABE), antibiotic resistance (evgA) and biofilm formation (artIP) were down-regulated. Repeated exposure to CORM-2 did not alter the gene expression patterns, the growth inhibitory response to CORM-2 or the MIC values for CORM-2, cefotaxime, ciprofloxacin and trimethoprim.

2016-10-06 | GSE87627 | GEO

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