Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Wageningen University Common Carp Genome Assembly

ABSTRACT: Wageningen University Common Carp Genome Assembly

PROVIDER: PRJEB42985 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR5280631.fastq.gz	Fastqsanger.gz
	ERR5285602_1.fastq.gz	Fastqsanger.gz
	ERR5285602_2.fastq.gz	Fastqsanger.gz
	ERR5285585_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 7

Similar Datasets

common carp genome

Project description:we sequenced and assembled the whole genome of common carp

| PRJEB7241 | ENA

Common carp

Project description:Gut microbiota of common carp Raw sequence reads

| PRJNA1136671 | ENA

Transcriptome Analysis of Common Carp (Cyprinus carpio) Fed with Animal and Plant Diets

Project description:purpose?To elucidate the relationship of utilization different type of diets in fish method?enzyme activity determination and transcriptome sequencing were performed in common carp fed with single animal diet group (group AD), plant diet group (group PD) and mix diets group (group MD). Group MD as control group results? 916 and 1296 differentially expressed genes were identified between group AD vs MD and PD vs MD. Protein digestion and absorption, bile secretion, hematopoietic cell lineage and intestinal immune network for IgA production pathways were significantly differentially expressed between common carp fed with single type of diet and mix diets. Conclusion?common carp fed with mix diets had stronger immunity than common carp fed with single type of diets.

2019-01-19 | GSE125366 | GEO

Gonadal transcriptome analysis of common carp

Project description:Gonadal transcriptome analysis of common carp

| PRJNA439680 | ENA

Transcriptional analysis of common carp (Cyprinus carpio L.) immune response against Cyprinid herpesvirus 3 (CyHV-3).

Project description:Cyprinid herpesvirus 3 (CyHV-3), also known as koi herpesvirus (KHV), is the aetiological agent of an emerging and lethal disease in common and koi carp. In this work we studied the immune response of two genetically different lines of common carp (Polish K and Polish R3) infected with CyHV-3 by immersion. The two carp lines presented a 20% difference in survival rate and, furthermore, significant difference in virus loads measured at day 3 post infection (p.i.). Microarray analysis revealed that 581 genes in line K (330 up-regulated, 251 down-regulated) and 107 genes in line R3 (77 up-regulated, 30 down-regulated), were at least 2-fold differentially expressed at day 3 p.i. compared to day 0. Genes which were at least 4-fold differentially expressed in both lines were selected as potential markers of an infection of common carp by CyHV-3. This group includes 17 up-regulated and only 1 down-regulated genes. In addition, microarray analysis revealed no significant differences in gene expression between line K and R3 at day 0. At day 3 p.i. there were, however, 76 genes that were at least 2-fold differentially expressed between the two lines. The kinetics of expression of T cell markers and selected cytokines indicate for higher activation of immune response in more resistant R3 line. Thus, our study revealed that differences in resistance to CyHV-3 between two carp lines can be correlated with differentially expressed immune-related genes. The experiment included four biological replicates with no dye swaps for (i) each strain (K and R3) and (ii) each condition (day 0 and day 3).

2012-01-05 | E-GEOD-30426 | biostudies-arrayexpress

Transcriptional analysis of common carp (Cyprinus carpio L.) immune response against Cyprinid herpesvirus 3 (CyHV-3).

2012-01-05 | GSE30426 | GEO

proteomics data of liver tissue from red crucian carp, common carp and allotetraploid

Project description:llotetraploid hybrids of Red Crucian Carp and common Carp are a new species bred by distant hybridization. SWATH-MS was applied for quantitative proteomics profiling in liver tissue of allotetraploid，Red Crucian Carp and Common Carp respectively.

2020-11-26 | PXD022748 |

fermented common carp (Cyprinus carpio L.)

Project description:fermented common carp (Cyprinus carpio L.) Raw sequence reads

| PRJNA778028 | ENA

fermented common carp (Cyprinus carpio L.)

Project description:fermented common carp (Cyprinus carpio L.) Raw sequence reads

| PRJNA778572 | ENA

Genomes of three breeds of common carp

Project description:High throughput genome sequencing of three breeds of common carp：Hebao carp, Yellow-river carp and mirror carp

| PRJEB21699 | ENA