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Gonadal transcriptome analysis of common carp

ABSTRACT: Gonadal transcriptome analysis of common carp

PROVIDER: PRJNA439680 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR6875310_1.fastq.gz	Fastqsanger.gz
	SRR6875310_2.fastq.gz	Fastqsanger.gz
	SRR6875309_1.fastq.gz	Fastqsanger.gz
	SRR6875309_2.fastq.gz	Fastqsanger.gz

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Gonadal transcriptome analysis of common carp

Project description:De novo assembly of immature gonadal transcriptome was performed to identify genes involved in gonadal development. A total of 81,757 and 43,257 transcripts were obtained from the immature testicular and ovarian transcriptomes, respectively. About 84,367 unigenes were constructed after removing redundancy which were a representation of both the gonadal transcriptomes. About 298 differentially expressed genes were identified. The present study identified certain important genes/factors involved in the gonadal development of C. carpio which may provide insights into the understanding of sex differentiation and gonadal development processes.

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Project description:Cyprinid herpesvirus 3 (CyHV-3), also known as koi herpesvirus (KHV), is the aetiological agent of an emerging and lethal disease in common and koi carp. In this work we studied the immune response of two genetically different lines of common carp (Polish K and Polish R3) infected with CyHV-3 by immersion. The two carp lines presented a 20% difference in survival rate and, furthermore, significant difference in virus loads measured at day 3 post infection (p.i.). Microarray analysis revealed that 581 genes in line K (330 up-regulated, 251 down-regulated) and 107 genes in line R3 (77 up-regulated, 30 down-regulated), were at least 2-fold differentially expressed at day 3 p.i. compared to day 0. Genes which were at least 4-fold differentially expressed in both lines were selected as potential markers of an infection of common carp by CyHV-3. This group includes 17 up-regulated and only 1 down-regulated genes. In addition, microarray analysis revealed no significant differences in gene expression between line K and R3 at day 0. At day 3 p.i. there were, however, 76 genes that were at least 2-fold differentially expressed between the two lines. The kinetics of expression of T cell markers and selected cytokines indicate for higher activation of immune response in more resistant R3 line. Thus, our study revealed that differences in resistance to CyHV-3 between two carp lines can be correlated with differentially expressed immune-related genes.

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