Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-Seq of fibrosarcoma cell lines from wild-type and Tnfaip8 knockout mice

ABSTRACT: RNA-Seq of fibrosarcoma cell lines from wild-type and Tnfaip8 knockout mice

PROVIDER: PRJEB44926 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR5919000_1.fastq.gz	Fastqsanger.gz
	ERR5919000_2.fastq.gz	Fastqsanger.gz
	ERR5919001_1.fastq.gz	Fastqsanger.gz
	ERR5919001_2.fastq.gz	Fastqsanger.gz
	ERR5918992_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

RNA-Seq of fibrosarcoma cell lines from wild-type and Tnfaip8 knockout mice

Project description:Fibrosarcoma cell lines were generated from wild-type and Tnfaip8 knockout mice. After stimulation with vehicle, LPA, or PDGF, RNAs were collected from the cells afterwards for RNA-Seq.

2023-01-01 | E-MTAB-10468 | biostudies-arrayexpress

Transcriptomes of maize seedlings in wild-type and Gβ knockout lines.

Project description:Purpose: We aim to reveal maize transcriptomic changes in wild-type and Gβ knockout lines. Methods: RNA-seq was used to reveal transcriptome of maize biological replicates of wild-type and Gβ knockout lines. Results: Differnentically expressed transcritps were identified by the comparison of biological replicates of wild-type and Gβ knockout lines. Conclusions: We identified differentially expressed genes in Gβ knockout lines.

2023-10-19 | GSE159634 | GEO

Transcriptomes of maize leaf sheath tissues in wild-type and lncRNA GARR2 knockout lines

Project description:Purpose: We aim to reveal maize transcriptomic changes in wild-type and lncRNA GARR2 knockout lines. Methods: RNA-seq was used to reveal transcriptome of maize biological replicates of wild-type and lncRNA GARR2 knockout lines. Results: Differnentically expressed transcritps were identified by the comparison of biological replicates of wild-type and lncRNA GARR2 knockout lines. Conclusions: We identified differentially expressed genes in lncRNA GARR2 knockout lines.

2023-10-12 | GSE159408 | GEO

Transcriptome profiling of A549 RB1 wild-type/knockout cell lines

Project description:Transcriptome profiling of A549 RB1 wild-type/knockout cell lines

| PRJNA548808 | ENA

Transcriptomes of maize seedlings in wild-type and Gβ knockout lines.

Project description:Transcriptomes of maize seedlings in wild-type and Gβ knockout lines.

| PRJNA669868 | ENA

Metabolic Biomarkers of Ageing in C57BL/6J Wild-Type and Flavin-Containing Monooxygenase 5 (FMO5)-Knockout Mice

Project description:It was recently demonstrated in mice that knockout of the flavin-containing monooxygenase 5 gene, Fmo5, slows metabolic ageing via pleiotropic effects. We have now used an NMR-based metabonomics approach to study the effects of ageing directly on the metabolic profiles of urine and plasma from male, wild-type C57BL/6J and Fmo5−/− (FMO5 KO) mice back-crossed onto the C57BL/6J background. The aim of this study was to identify metabolic signatures that are associated with ageing in both these mouse lines and to characterize the age-related differences in the metabolite profiles between the FMO5 KO mice and their wild-type counterparts at equivalent time points. We identified a range of age-related biomarkers in both urine and plasma. Some metabolites, including urinary 6-hydroxy-6-methylheptan-3-one (6H6MH3O), a mouse sex pheromone, showed similar patterns of changes with age, regardless of genetic background. Others, however, were altered only in the FMO5 KO, or only in the wild-type mice, indicating the impact of genetic modifications on mouse ageing. Elevated concentrations of urinary taurine represent a distinctive, ageing-related change observed only in wild-type mice.

2018-06-20 | MTBLS667 | MetaboLights

Transcriptome profiling of A549 RB1 wild-type/knockout cell lines

Project description:A549 cells were co-transfected with CRISPR/Cas9 (containing sgRNA and GFP) and HDR donor plasmids (containing RFP and puromycin). The genetic editing cells were selected by puromycin. And then, we performed RNA sequencing for transcription profiling of A549 RB1 RB1 wild-type/knockout cell lines. The raw data were processed with Tophat and cuffdiff for gene expression analysis.

2020-08-25 | GSE132722 | GEO

RNAseq of wild-type and giantin knockout retinal pigment epithelial cell lines

Project description:RNAseq of wild-type and giantin knockout retinal pigment epithelial cell lines

| PRJEB20121 | ENA