Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

British Ash Tree Genome Project (Fraxinus excelsior) and resequencing of European provenances

ABSTRACT: Genome sequence of Fraxinus excelsior (ash) with resequence data for 37 ash trees from across Europe and RNA-seq from four tissues. Plus whole genome shotgun bisulphite sequence data for Fraxinus excelsior and F. mandschurica.

OTHER RELATED OMICS DATASETS IN: MTBLS372

PROVIDER: PRJEB4958 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR1399492_1.fastq.gz	Fastqsanger.gz
	ERR1399492_2.fastq.gz	Fastqsanger.gz
	ERR1399493_1.fastq.gz	Fastqsanger.gz
	ERR1399493_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 194

Similar Datasets

Methylation Fraxinus excelsior 2451S ONT genome

Project description:A new genome of Fraxinus excelsior was assembled using a hybrid approach combining Nanopore and Illumina data (BioProject PRJNA865134, SAMN30100368, genome JANJPF000000000 ). Methylation was also assessed in the genome. Manuscript title: Fraxinus excelsior updated long-read genome reveals the importance of MADS-box genes in tolerance mechanisms against ash dieback, G3:Genes|Genomes|Genetics

2025-03-03 | GSE214553 | GEO

Fraxinus excelsior transcriptome and methylome

Project description:This SuperSeries is composed of the SubSeries listed below. Manuscript title: Fraxinus excelsior updated long-read genome reveals the importance of MADS-box genes in tolerance mechanisms against ash dieback, G3:Genes|Genomes|Genetics

2025-03-03 | GSE214554 | GEO

Methylation comparison between ash tolerant and susceptible trees to ash dieback [methylation]

Project description:DNA was extracted from two ash tree samples, one tolerant and one susceptible to ash dieback. The DNA was sequenced using Nanopore technologies and the methylation was called against the new genome (BioProject PRJNA865134, SAMN30100368, genome JANJPF000000000 ) to identify differentially methylated regions between both samples. Manuscript title: Fraxinus excelsior updated long-read genome reveals the importance of MADS-box genes in tolerance mechanisms against ash dieback, G3:Genes|Genomes|Genetics

2025-03-03 | GSE214552 | GEO

Fraxinus excelsior

Project description:Transcriptome profiling of Fraxinus excelsior clones challenged by Emerald ash borer

| PRJDB15336 | ENA

Fraxinus excelsior

Project description:Fraxinus excelsior Raw sequence reads

| PRJNA1024896 | ENA

Fraxinus excelsior

Project description:Fraxinus excelsior Raw sequence reads

| PRJNA1158680 | ENA

Gene expression of the 182 Danish ash accessions (Harper et al., 2016, ENA PRJEB10202) using the new long-read F.excelsior genome (PRJNA865134, SAMN30100368)

Project description:A new genome of Fraxinus excelsior (PRJNA865134) was assembled using a hybrid approach combining Nanopore and Illumina data. The gene expression of a 182 Danish tree panel (Harper et al. 2016) was assessed using the new genome as reference (BioProject PRJNA865134, SAMN30100368, genome JANJPF000000000 ).Manuscript title: Fraxinus excelsior updated long-read genome reveals the importance of MADS-box genes in tolerance mechanisms against ash dieback, G3:Genes|Genomes|Genetics

2025-03-03 | GSE214551 | GEO

Metabolomic profiling of Fraxinus excelsior genotypes tolerant or susceptible to ash dieback disease reveals changes in iridoid glycosides

Project description:European common ash, Fraxinus excelsior L., is currently threatened by Ash dieback (ADB) caused by the fungus, Hymenoscyphus fraxineus. To detect and identify metabolites that may be products of pathways important in contributing to resistance against H. fraxineus we performed untargeted metabolomic profiling on leaves from selected F. excelsior individuals showing strong tolerance or susceptibility to H. fraxineus. We identified sets of "features" [small molecules] that enabled strong discrimination between tolerant or susceptible genotypes of F. excelsior. Strikingly, tolerant F. excelsior lines exhibited low levels of iridoid glycosides, known anti-feeding deterrents. As Europe is threatened by Emerald Ash Borer (Agrilus planipennis), an invasive wood boring beetle native to East Asia that has devastated North American ash, our study raises the question whether selection for resistance to H. fraxineus leads to ecological trade-offs that result in susceptibility to emerging pests such as emerald ash borer.

2016-11-09 | MTBLS372 | MetaboLights

Fraxinus excelsior transcriptome and methylome

Project description:Fraxinus excelsior transcriptome and methylome

| PRJNA885852 | ENA

Fraxinus excelsior isolate:2451S

Project description:Fraxinus excelsior isolate:2451S Targeted Locus (Loci)

| PRJNA865134 | ENA