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British Ash Tree Genome Project (Fraxinus excelsior) and resequencing of European provenances

ABSTRACT: Genome sequence of Fraxinus excelsior (ash) with resequence data for 37 ash trees from across Europe and RNA-seq from four tissues. Plus whole genome shotgun bisulphite sequence data for Fraxinus excelsior and F. mandschurica.

OTHER RELATED OMICS DATASETS IN: MTBLS372

PROVIDER: PRJEB4958 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
	FTPI01.dat.gz	Other
	FTPI01.fasta.gz	Fasta.gz
	FTPI01.master.dat	Other
	ERR1399492_1.fastq.gz	Fastqsanger.gz
	ERR1399492_2.fastq.gz	Fastqsanger.gz

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Project description:European common ash, Fraxinus excelsior L., is currently threatened by Ash dieback (ADB) caused by the fungus, Hymenoscyphus fraxineus. To detect and identify metabolites that may be products of pathways important in contributing to resistance against H. fraxineus we performed untargeted metabolomic profiling on leaves from selected F. excelsior individuals showing strong tolerance or susceptibility to H. fraxineus. We identified sets of "features" [small molecules] that enabled strong discrimination between tolerant or susceptible genotypes of F. excelsior. Strikingly, tolerant F. excelsior lines exhibited low levels of iridoid glycosides, known anti-feeding deterrents. As Europe is threatened by Emerald Ash Borer (Agrilus planipennis), an invasive wood boring beetle native to East Asia that has devastated North American ash, our study raises the question whether selection for resistance to H. fraxineus leads to ecological trade-offs that result in susceptibility to emerging pests such as emerald ash borer.

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Project description:Ash dieback (ADB), caused by Hymenoscyphus fraxineus, has severely damaged a large proportion of ash trees (Fraxinus excelsior) in continental Europe. We have little damage data for the British Isles where the disease was found only five years ago in the Southeast, and is still spreading. A large-scale screening trial to evaluate ADB damage to provenances of F. excelsior sourced from throughout the British Isles was planted in 2013 in the southeast of England. In 2016, we scored trees by their level of ADB damage observed in field at the two worst affected (based on assessments in 2015) of the 14 sites. Significant differences were found in average ADB damage among planting sites and seed source provenances. Trees from certain provenances in Scotland were the least damaged by ADB, whereas trees from Wales and Southeast England were the most badly damaged in both trial sites. Thus the levels of ADB damage currently seen in ash populations in Southeast England may not be an accurate predictor of the damage expected in future throughout the British Isles. Given all provenances contained some healthy trees, a breeding programme to produce genetically variable native ash tree populations with lower ADB susceptibility may be feasible.

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