Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

UcMarCocc

ABSTRACT: Marvania coccoides, genomic and transcriptomic data

PROVIDER: PRJEB68019 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR12245615_1.fastq.gz	Fastqsanger.gz
	ERR12245615_2.fastq.gz	Fastqsanger.gz
	ERR12205285.fastq.gz	Fastqsanger.gz
	ERR12205286.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

ucMarCocc

Project description:Marvania coccoides

| PRJEB68020 | ENA

Marvania coccoides

Project description:Marvania coccoides overview

| PRJNA1048620 | ENA

ucMarCocc1

Project description:Marvania coccoides genome assembly, ucMarCocc1

| PRJEB70826 | ENA

ucMarCocc1 alternate haplotype

Project description:Marvania coccoides genome assembly, ucMarCocc1, alternate haplotype

| PRJEB70825 | ENA

Blautia coccoides

Project description:Blautia coccoides overview

| PRJNA904861 | ENA

tfGorAlbo

Project description:Gordius_albopunctatus, genomic and transcriptomic data

| PRJEB78907 | ENA

Tropheryma whipplei proteome - Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme

Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.

2017-12-18 | PXD006238 | Pride

xgBolRugo1

Project description:Bolma rugosa, genomic and transcriptomic data

| PRJEB83380 | ENA

iyAmbArma

Project description:Amblyteles armatorius, genomic and transcriptomic data

| PRJEB50783 | ENA

icAgrLine

Project description:Agriotes lineatus, genomic and transcriptomic data

| PRJEB73670 | ENA