Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Identification of small RNA content in Agrobacterium fabrum C58

ABSTRACT: Identification of small RNA content in Agrobacterium fabrum C58

PROVIDER: PRJEB7332 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR629132.fastq.gz	Fastqsanger.gz
	ERR629133.fastq.gz	Fastqsanger.gz
	ERR629134.fastq.gz	Fastqsanger.gz
	ERR629135.fastq.gz	Fastqsanger.gz
	ERR629136.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Identification of small RNA content in Agrobacterium fabrum C58

Project description:Sequencing by the Illumina Genome Analyzer II(36 bp) of the reverse transcribed small RNAs (<500b) using the Illumina directional mRNA-Seq protocol. This was performed on A. fabrum C58 strain from several growth conditions. Reads were then aligned to the genome of the bacteria (Accession number NC_003062, NC_003063, NC_003064 and NC_003065)

2016-03-18 | E-MTAB-2947 | biostudies-arrayexpress

Agrobacterium fabrum str. C58

Project description:Agrobacterium fabrum str. C58 Transcriptome or Gene expression

| PRJNA188456 | ENA

Agrobacterium fabrum strain:C58

Project description:Transcriptome analysis of Agrobacterium fabrum C58 and its mutant defective in phosphatidylethanolamine synthesis under environmental stress conditions

| PRJNA1155898 | ENA

Agrobacterium fabrum str. C58

Project description:Agrobacterium tumefaciens C58 whole-genome tiling microarray design and validation

| PRJNA261977 | ENA

RNASeq Analysis of MirA Regulator in Agrobacterium tumefaciens C58

Project description:Performed RNASeq analysis comparing A. tumefaciens C58 (fabrum) harboring a plasmid driving ectopic expression of mirA regulator gene (ATU_RS08050) from Plac promoter with the isogenic strain haboring the same plasmid with no mirA (Vector control)

2021-12-29 | GSE174467 | GEO

Agrobacterium fabrum

Project description:Agrobacterium fabrum overview

| PRJNA163837 | ENA

Agrobacterium tumefaciens C58 whole-genome tiling microarray design and validation

Project description:This research focuses on the design, manufacturing and validation of a new Agrobacterium tumefaciens C58 whole-genome tiling microarray platform for novel RNA transcript discovery. A whole-genome tiling microarray allows both annotated genes as well as previously unknown RNA transcripts to be detected and quantified at once. The Agrobacterium tumefaciens C58 genome is re-acquired with next-generation sequencing and then used to design the tilinlg microarray with the thermodynamic analysis program Picky. Validations are performed by subjecting Agrobacterium tumefaciens C58 under various growth conditions and then using the tling microarrays to verify expected gene expression patterns.

2014-09-25 | GSE61737 | GEO

Transcriptomic comparison of tumoric tissues induced by different c58 agrobacterium lines; Quorum-sensing in Agrobacterium-induced tumors

Project description:rs11-03_agro transcriptomic comparison of tumoric tissues induced by different c58 agrobacterium lines What are the functions and the regulatory pathways of the bacterial quorum-sensing system in the context of Agrobacterium/Arabidopsis interactions?

2013-09-01 | GSE48402 | GEO

Agrobacterium fabrum

Project description:Agrobacterium fabrum Raw sequence reads

| PRJNA774494 | ENA

Arabidopsis thaliana Col-0 root transcriptome response to Agrobacterium tumefaciens C58

Project description:As sessile organisms, plants require dynamic pathways in order to recognize pathogens and coordinate plant defenses by signalling. Agrobacterium tumefaciens C58 is able to avoid triggering plant defenses prior to entering the cell, and therefore is only detected once infection has begun making Agrobacterium a plant pathogen to numerous plant species. Understanding plant responses to Agrobacterium will be useful in improving plant defenses and potentially may also improve plant transformation efficiency. Microarrays were utilized for detailing the global gene expression pattern in A. thaliana Col-0 roots in response to A. tumefaciens C58 for the identification of differentially expressed genes.

2014-10-28 | GSE62750 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data