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Agrobacterium fabrum strain:C58

ABSTRACT: Transcriptome analysis of Agrobacterium fabrum C58 and its mutant defective in phosphatidylethanolamine synthesis under environmental stress conditions

PROVIDER: PRJNA1155898 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR30539278_1.fastq.gz	Fastqsanger.gz
	SRR30539278_2.fastq.gz	Fastqsanger.gz
	SRR30539279_1.fastq.gz	Fastqsanger.gz
	SRR30539279_2.fastq.gz	Fastqsanger.gz
	SRR30539280_1.fastq.gz	Fastqsanger.gz

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Agrobacterium fabrum str. C58

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Project description:Sequencing by the Illumina Genome Analyzer II(36 bp) of the reverse transcribed small RNAs (<500b) using the Illumina directional mRNA-Seq protocol. This was performed on A. fabrum C58 strain from several growth conditions. Reads were then aligned to the genome of the bacteria (Accession number NC_003062, NC_003063, NC_003064 and NC_003065)

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Transcriptomic comparison of tumoric tissues induced by different c58 agrobacterium lines; Quorum-sensing in Agrobacterium-induced tumors

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Arabidopsis thaliana Col-0 leaf transcriptome response to Agrobacterium tumefaciens C58

Project description:As sessile organisms, plants require dynamic pathways in order to recognize pathogens and coordinate plant defenses by signalling. Agrobacterium tumefaciens C58 is able to avoid triggering plant defenses prior to entering the cell, and therefore is only detected once infection has begun making Agrobacterium a plant pathogen to numerous plant species. Understanding plant responses to Agrobacterium will be useful in improving plant defenses and potentially may also improve plant transformation efficiency. Microarrays were utilized for detailing the global gene expression pattern in A. thaliana Col-0 leafs in response to A. tumefaciens C58 for the identification of differentially expressed genes.

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2014-10-28 | GSE62750 | GEO

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