Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq of 24hpf Zebrafish larvae comparing foxg1a mutants to WT siblings

ABSTRACT: RNA-seq of 24hpf Zebrafish larvae comparing foxg1a mutants to WT siblings

PROVIDER: PRJEB73599 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR12724504_1.fastq.gz	Fastqsanger.gz
	ERR12724504_2.fastq.gz	Fastqsanger.gz
	ERR12724505_1.fastq.gz	Fastqsanger.gz
	ERR12724505_2.fastq.gz	Fastqsanger.gz
	ERR12724506_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 32

Similar Datasets

RNA-seq of 24hpf Zebrafish larvae comparing foxg1a mutants to WT siblings

Project description:Bulk tissue RNA-sequencing of individual 24hpf zebrafish larvae to compare the gene expression values between wild type and foxg1a nonsense mutants (heterozygous and homozygous mutants). The mutation is a 5bp deletion (32bp from canonical start codon; AAATG deleted).

2024-03-29 | E-MTAB-13886 | biostudies-arrayexpress

RNAseq on uhrf1 zebrafish mutant larvae at 5 dpf compared to phenotypically normal siblings

Project description:In this study, we performed RNA-seq on 5 dpf whole larvae of uhrf1-hi272 mutants and phenotypically wild-type siblings to determine changes in the transcriptomic profile.

2020-12-01 | GSE160708 | GEO

Dataset Zaupa et al, whole-larva proteome from 7dpf fed zebrafish larvae and non-fed siblings.

Project description:Whole-larva proteome from 7dpf fed zebrafish larvae and non-fed siblings.

2023-02-27 | MSV000091374 | MassIVE

Microarray analysis comparing zebrafish insulin knockout mutants to non homozygous controls

Project description:To discover insulin-independent pathways controlling glucose homeostasis, we generated zebrafish insulin mutants. Aiming to characterize the transcriptional changes induced by deletion of insulin, we performed a microarray analysis comparing insulin mutant animals with their non-mutant siblings at 108 hours post fertilization. Embryos were grown at 28 degrees C until 108 hpf, and were separately collected as mutants or non-mutants to form pools of 10 animals per sample. Total RNA was isolated, sample quality was tested using a Bioanalyzer and microarray analysis was performed by Oak Labs (Germany)

2018-10-20 | E-MTAB-7282 | biostudies-arrayexpress

Transcriptomic profiling of the liver from dnmt1 mutant zebrafish larvae compared to their phenotypically normal siblings at 120 hpf

Project description:In this dataset we performed RNA-seq on pools of livers dissected at 120 hpf from dnmt1(s904) mutants and phenotipically wild-type looking siblings.

2020-12-01 | GSE160726 | GEO

Zebrafish fbln1 mutant (ulg075) larvae at 10dpf versus AB wt

Project description:We generated a 16 nucleotide deletion mutant in the zebrafish fbln1 gene and we compared the whole larvae transcriptome to wt siblings in 10dpf larvae.

2023-11-30 | GSE238059 | GEO

DNA methylation analysis by RRBS of WT and uhrf1-hi272 mutant zebrafish whole larvae at 5 dpf

Project description:DNA methylation is a central repressive epigenetic mark. In this dataset we performed RRBS on whole zebrafish larvae from uhrf1-hi272 mutants and phenotypically wild-type siblings to determine which genomic regions have changes in DNA methylation due to uhrf1 loss.

2020-12-01 | GSE160706 | GEO

Genome-wide expression profiling of whole of uhrf1 mutant zebrafish compared to WT siblings at 120 hpf

Project description:The goal of this study is to compare gene expression levels in whole uhrf1 mutant larvae to phenotypically normal siblings.

2017-07-21 | GSE91024 | GEO

Gene expression profiles of endothelial cells from mutants and siblings of tsu3994

Project description:Through RNA-seq, we report endothelial cells from mutants had 1063 up-regulated and 132 down-regulated genes (>2.0 fold with false discovery rate <0.001) when compared to siblings.

2017-03-07 | GSE83987 | GEO

Transcriptomic analysis of dj-1-/- zebrafish brains compared to wild type siblings

Project description:RNA-Seq comparing transcript expression in the brains of 3 dj-1-/- mutant zebrafish and 3 wild type siblings at 16 weeks post fertilisation.

2019-08-02 | GSE135271 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data