Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Shk-1 KO C.elegans with and without infection of vibrio cholerae

ABSTRACT: shk-1 KO C.elegans with and without infection of vibrio cholerae

PROVIDER: PRJEB76426 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR13244175_1.fastq.gz	Fastqsanger.gz
	ERR13244175_2.fastq.gz	Fastqsanger.gz
	ERR13244176_1.fastq.gz	Fastqsanger.gz
	ERR13244176_2.fastq.gz	Fastqsanger.gz
	ERR13244177_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

shk-1 KO C.elegans with and without infection of vibrio cholerae

Project description:RNA-seq transcriptomic comparison of C.elegans, grown on a lawn of OP50 vs on a lawn of vibrio cholerae; shk-1 has been knocked out. The corresponding wildtype data is located in #E-MTAB-13001

2024-11-01 | E-MTAB-14158 | biostudies-arrayexpress

Wildtype C.elegans infected with vibrio cholerae

Project description:RNA-seq transcriptomic comparison of C.elegans, grown on a lawn of Escherichia coli OP50 vs on a lawn of vibrio cholerae

2023-10-12 | E-MTAB-13001 | biostudies-arrayexpress

Wildtype C.elegans infected with vibrio cholerae

Project description:Wildtype C.elegans infected with vibrio cholerae

| PRJEB62540 | ENA

V. cholerae transcriptome without treatment and with indole or sub-MIC tobramycin

Project description:We study gene expression levels of V. cholerae N16961 hapR+ corrected strain in exponential phase without and with indole or tobramycin.

2021-08-26 | GSE182561 | GEO

Changes in small RNAs upon Viral infection of C.elegans

Project description:Attempt to identify small non-coding RNAs that change in levels as a result of viral infection of C.elegans

2013-06-01 | GSE41057 | GEO

Expression data from C. elegans

Project description:We exposed wild-type Vibrio cholerae E7496, multiple Vibrio cholerae virulence factor deleted genes with intact hemolysin A gene [CVD109] and without hemolysin A gene [CVD110] in E7946, and E.coli OP50 to wild-type C.elegans N2 for 18 hours. We used microarrays to detail the global gene expression and identified distinct classes of up-regulated and down-regulated genes during this process.

2011-12-02 | GSE34026 | GEO

Analysis of gene expression changes upon infection of C.elegans with Orsay virus

Project description:Analysis of the transcriptional response to viral infection in C.elegans.

2013-06-01 | GSE41056 | GEO

Expression data from C. elegans

2011-12-02 | E-GEOD-34026 | biostudies-arrayexpress

Tissue Transcriptomics of mice at different stages of Vibrio cholerae infection

Project description:Tissue Transcriptomics of mice at different stages of Vibrio cholerae infection and possible RNA-Seq of Vibrio cholerae at the same time pointsThese data are part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2014-08-20 | E-ERAD-188 | biostudies-arrayexpress

Expression Data from International C.elegans Experiment 1st

Project description:The effect of microgravity on gene expression in C.elegans was comprehensively analysed by DNA microarray. This is the first DNA microarray analysis for C.elegans grown under microgravity. Hyper gravity and clinorotation experiments were performed as reference against the flight experiment.

2012-03-31 | GSE36358 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data