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DaCenEryt

ABSTRACT: Centaurium erythraea, genomic and transcriptomic data

PROVIDER: PRJEB79863 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR13670000_1.fastq.gz	Fastqsanger.gz
	ERR13670000_2.fastq.gz	Fastqsanger.gz
	ERR13670001_1.fastq.gz	Fastqsanger.gz
	ERR13670001_2.fastq.gz	Fastqsanger.gz
	ERR13660042.fastq.gz	Fastqsanger.gz

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daCenEryt

Project description:Centaurium erythraea

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Centaurium erythraea subsp. majus isolate:BPTPS121

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Centaurium erythraea subsp. majus isolate:BPTPS121

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Transcriptome analysis of wild type and erythromycin-producing strain of S. erythraea

Project description:Erythromycin is a medically important antibiotic, biosynthesized by the actinomycete Saccharopolyspora erythraea. We used transcriptomic approach to compare whole genome expression in erythromycin high-producing strain, compared to the wild type S. erythraea strain in four stages of fermentation.

2016-06-22 | GSE65007 | GEO

Transcriptome analysis of wild type and erythromycin-producing strain of S. erythraea

2016-06-22 | E-GEOD-65007 | biostudies-arrayexpress

Saccharopolyspora erythraea RNA-seq

Project description:We report the high-throughput profiling of saccharopolyspora erythraea including a industrial strain HL3168 E3 and a wild-type strain NRRL23338. The aim was to evaluate the difference in expression of sRNA predicted in silico related to secondary metabolites in Saccharopolyspora erythraea. Comparison of the gene expression difference in 2 Saccharopolyspora erythraea strains.

2013-07-16 | E-GEOD-48887 | biostudies-arrayexpress

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2013-07-16 | GSE48887 | GEO

tfGorAlbo

Project description:Gordius_albopunctatus, genomic and transcriptomic data

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Tropheryma whipplei proteome - Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme

Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.

2017-12-18 | PXD006238 | Pride

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