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DaFraExce

ABSTRACT: Fraxinus excelsior (European ash), genomic and transcriptomic data

PROVIDER: PRJEB81012 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	ERR13800546.fastq.gz	Fastqsanger.gz
	ERR13800547.fastq.gz	Fastqsanger.gz
	ERR13802685_1.fastq.gz	Fastqsanger.gz
	ERR13802685_2.fastq.gz	Fastqsanger.gz
	ERR13802686_1.fastq.gz	Fastqsanger.gz

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daFraExce

Project description:Fraxinus excelsior (European ash)

| PRJEB81013 | ENA

Metabolomic profiling of Fraxinus excelsior genotypes tolerant or susceptible to ash dieback disease reveals changes in iridoid glycosides

Project description:European common ash, Fraxinus excelsior L., is currently threatened by Ash dieback (ADB) caused by the fungus, Hymenoscyphus fraxineus. To detect and identify metabolites that may be products of pathways important in contributing to resistance against H. fraxineus we performed untargeted metabolomic profiling on leaves from selected F. excelsior individuals showing strong tolerance or susceptibility to H. fraxineus. We identified sets of "features" [small molecules] that enabled strong discrimination between tolerant or susceptible genotypes of F. excelsior. Strikingly, tolerant F. excelsior lines exhibited low levels of iridoid glycosides, known anti-feeding deterrents. As Europe is threatened by Emerald Ash Borer (Agrilus planipennis), an invasive wood boring beetle native to East Asia that has devastated North American ash, our study raises the question whether selection for resistance to H. fraxineus leads to ecological trade-offs that result in susceptibility to emerging pests such as emerald ash borer.

2016-11-09 | MTBLS372 | MetaboLights

Fungi

Project description:Fungal communities associated with seeds of European ash (Fraxinus excelsior)

| PRJDB17107 | ENA

MetaboLights MTBLS372 - GNPS Metabolomic profiling of Fraxinus excelsior genotypes tolerant or susceptible to ash dieback disease reveals changes in iridoid glycosides

Project description:This data set is downloaded from MetaboLights (http://www.ebi.ac.uk/metabolights/) accession number MTBLS372 Abstract:European common ash, Fraxinus excelsior L., is currently threatened by Ash dieback (ADB) caused by the fungus, Hymenoscyphus fraxineus. To detect and identify metabolites that may be products of pathways important in contributing to resistance against H. fraxineus we performed untargeted metabolomic profiling on leaves from selected F. excelsior individuals showing strong tolerance or susceptibility to H. fraxineus. We identified sets of “features” [small molecules] that enabled strong discrimination between tolerant or susceptible genotypes of F. excelsior. Strikingly, tolerant F. excelsior lines exhibited low levels of iridoid glycosides, known anti-feeding deterrents. As Europe is threatened by Emerald Ash Borer (Agrilus planipennis), an invasive wood boring beetle native to East Asia that has devastated North American ash, our study raises the question whether selection for resistance to H. fraxineus leads to ecological trade-offs that result in susceptibility to emerging pests such as emerald ash borer.

2017-04-17 | MSV000080960 | GNPS

Project description:Fraxinus excelsior GWAS

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Fraxinus excelsior

Project description:Transcriptome profiling of Fraxinus excelsior clones challenged by Emerald ash borer

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Project description:Mycobiome of Fraxinus excelsior

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British Ash Tree Genome Project (Fraxinus excelsior) and resequencing of European provenances

Project description:Genome sequence of Fraxinus excelsior (ash) with resequence data for 37 ash trees from across Europe and RNA-seq from four tissues. Plus whole genome shotgun bisulphite sequence data for Fraxinus excelsior and F. mandschurica.

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Fraxinus

Project description:Transcriptomic signatures of ash (Fraxinus spp.) phloem.

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Project description:Bacterial microbiome of Fraxinus excelsior

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