Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Microbial community of legacy effects of soil amendments in a Cd/Cu-combined contaminated field

ABSTRACT: microbial community of legacy effects of soil amendments in a Cd/Cu-combined contaminated field Raw sequence reads

PROVIDER: PRJNA1007898 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR25723028_1.fastq.gz	Fastqsanger.gz
	SRR25723028_2.fastq.gz	Fastqsanger.gz
	SRR25723029_1.fastq.gz	Fastqsanger.gz
	SRR25723029_2.fastq.gz	Fastqsanger.gz
	SRR25723030_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 64

Similar Datasets

fungal community of legacy effects of soil amendments in a Cd/Cu-combined contaminated field

Project description:fungal community of legacy effects of soil amendments in a Cd/Cu-combined contaminated field Raw sequence reads

| PRJNA1007946 | ENA

Transcription profiling of Arabidopsis roots after treatment with rhizotoxic ions Al, Cu, Cd and NaCl

Project description:Comparison of gene expression responses to rhizotoxic ions (Al, Cu, Cd and NaCl) in Arabidopsis roots.

2009-05-04 | E-MEXP-1907 | biostudies-arrayexpress

Profiling transcriptomic response of Enchytraeus albidus to Cu and Ni: Comparison with Cd and Zn

Project description:Metals, including copper (Cu) and nickel (Ni) are among the most common contaminants in soils in Europe. Although their effects are relatively well known regarding survival and reproduction of soil invertebrates, their modes of action in these organisms are still poorly studied. Enchytraeus albidus has been used in soil ecotoxicology for many years, and more recently has a gene library and an oligonucleotide microarray for this species which allowed gene expression studies. This has potentiated the means to study further in depth the mechanisms of response to stressors. The main aim of this study is to understand the mechanisms of response of E. albidus to Cu and Ni. For that we have 1) assessed and compared the transcriptomic profile of E. albidus in response to Cu and Ni and 2) compared the Cu, Ni, Cd and Zn transcriptomic profiles. For the microarray hybridizations, E. albidus were exposed to the reproduction effect concentrations EC50 and EC90 of Cu and Ni during 4 days. Results indicate that Cu and Ni have to some extent, similar mechanisms of toxicity and that have already been identified in other species, indicating cross-species conserved mechanisms. Based on hierarchical clustering, it was possible to observe a clear separation of Cd treatments from all other metals. This separation strongly correlates with the available information regarding the toxicokinetics of the tested metals, in which Ni shows properties similar to essential metals. Gene expression in E.albidus was measured 4 days after exposure to Copper, Nickel, Cadmium and Zinc at 2 concentrations of effect on reprocduction (EC50 and EC90). Three biological replicates per exposure condition and 6 biological replicates of control conditions were used.

2013-12-31 | E-GEOD-47662 | biostudies-arrayexpress

Profiling transcriptomic response of Enchytraeus albidus to Cu and Ni: Comparison with Cd and Zn

2013-12-31 | GSE47662 | GEO

BSFL gut under Cu and Cd exposure

Project description:BSFL gut under Cu and Cd exposure Raw sequence reads

| PRJNA703335 | ENA

Substrates of Constructed wetlands Cu, Cd, SMX

Project description:Substrates of Constructed wetlands Cu, Cd, SMX Raw sequence reads

| PRJNA1020624 | ENA

Cu contaminated soil metagenome

Project description:Cu contaminated soil metagenome Targeted loci environmental

| PRJNA609894 | ENA

Transcriptomic response to mild rhizotoxic ion stresses: Comparison of gene expression responses to mild concentration of rhizotoxic ions (Al, Cu, Cd and NaCl) in Arabidopsis roots.

Project description:Transcriptional profiling of genes recoverd by Arabidopsis Col-4 line. The roots were exposed to Al, Cd, Cu and NaCl stressed conditions, then genes recovered expression were analyzed. Goal is identification of the genes worked for milder rhizotoxic ion stresses.

2019-01-04 | GSE108751 | GEO

Zebra fish (Danio rerio) larvae exposure at Cd or Cu

Project description:Zebra fish (Danio rerio) larvae exposure at Cd or Cu Raw sequence reads

| PRJNA793298 | ENA

Amendments samples

Project description:Amendments samples Genome sequencing and assembly

| PRJNA1069229 | ENA