Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Liasis olivaceus (olive python) genome, rLiaOli1

PROVIDER: PRJNA1008638 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR30360938_subreads.fastq.gz	Fastqsanger.gz
	SRR30360939_subreads.fastq.gz	Fastqsanger.gz
	SRR30360940_subreads.fastq.gz	Fastqsanger.gz
	SRR30360941_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 13

Similar Datasets

Project description:Liasis olivaceus (olive python) genome, rLiaOli1, sequence data

| PRJNA1151969 | ENA

Liasis olivaceus isolate:rLiaOli1

Project description:Liasis olivaceus (olive python) genome, rLiaOli1, haplotype 1

| PRJNA923812 | ENA

Liasis olivaceus isolate:rLiaOli1

Project description:Liasis olivaceus (olive python) genome, rLiaOli1, haplotype 2

| PRJNA923813 | ENA

Liasis olivaceus

Project description:Liasis olivaceus overview

| PRJNA924495 | ENA

Project description:Transcriptome sequencing of olive flounder (Paralichthys olivaceus)

| PRJNA867739 | ENA

Transcriptome data involved in Japanese flounder (Paralichthys olivaceus) albinism

Project description:In this study, a high-throughput sequencing strategy was employed to identify the mRNA involved in P. olivaceus albinism. Based on P. olivaceus genome, RNA-seq identified 21,787 know genes and 711 new genes by transcripts assembly. Of those, 235 genes exhibited significantly different expression pattern (fold change ≥2 or ≤0.5 and q-value≤0.05), including 194 down-regulated genes and 41 up-regulated genes in albino versus normally pigmented individuals. These genes were enriched to 81 GO terms and 9 KEGG pathways (p≤0.05). Among those, the pigmentation related pathways-Melanogenesis and tyrosine metabolism were contained.

2017-07-13 | GSE99341 | GEO

Paralichthys olivaceus

Project description:Olive flounder (Paralichthys olivaceus) head kidney transcriptome raw reads

| PRJNA379500 | ENA

MicroRNA map of Paralichthys olivaceus spleen at 6h and 24h after Streptococcus iniae infection

Project description:In this study, we applied high-throughput sequencing technology to examine miRNAs in Japanese flounder (Paralichthys olivaceus) infected with Streptococcus iniae at different times.

2021-12-30 | GSE133946 | GEO

Project description:Temperature shifts in gut microbiotaa of olive flounder (Paralichthys olivaceus)

| PRJNA993814 | ENA

Delineation of the olive pollen proteome: A focus on its allergen families reveals cyclophilin as a relevant allergen

Project description:The delineation of the olive pollen proteome and its allergogram can improve the clinical management of patients with this pollinosis. We here integrated the recently described wild olive genomic data in a comprehensive proteomic approach to get the annotated olive (Olea europaea) pollen proteome and complete its complex allergogram. Olive pollen proteins were identified by LC-MS/MS using predicted protein sequences from its genome. GO annotation, KEGG Pathway analysis and identification of allergen families were performed by bioinformatics. Recombinant DNA, protein expression and purification, and immunological analyses were used to characterize putative allergens. A total of 1,907 proteins were identified. 60% of the proteins were predicted to possess catalytic activity and be involved in metabolic processes. 203 proteins belonging to 47 allergen families were found, with 37 non-previously described in olive pollen. Of four potential allergens produced in Escherichia coli, a peptidyl-prolyl cis-trans isomerase -cyclophilin-, masked in the protein extract by the major allergen Ole e 1, was found as a new olive pollen allergen (Ole e 15). 63% of the Ole e 15-sensitized patients were children and showed strong IgE recognition of the allergen. Ole e 15 shared high sequence identity with other plant, animal and fungal cyclophilins and a high IgE cross-reactivity with pollen, plant food and animal extracts. Taken together, the combination of available genomic data with proteomics permitted the profiling of the olive pollen proteome, revealing the spectrum of allergen families and cyclophilin as a new relevant allergen implicated in cross-reactivity.

2019-06-17 | PXD012280 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data