Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oreochromis niloticus

ABSTRACT: Taxonomic and Functional characteristics of the gut and gill microbiota of healthy and diseased tilapia (Oreochromis niloticus)

PROVIDER: PRJNA1047943 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27103871_1.fastq.gz	Fastqsanger.gz
	SRR27103871_2.fastq.gz	Fastqsanger.gz
	SRR27103872_1.fastq.gz	Fastqsanger.gz
	SRR27103872_2.fastq.gz	Fastqsanger.gz
	SRR27103873_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Oreochromis niloticus

Project description:Gut metagenome analyses of healthy and diseased Nile tilapia (Oreochromis niloticus) cultured in Bangladesh

| PRJNA871955 | ENA

Total RNA sequencing of the liver tissues of Oreochromis niloticus (Nile Tilapia) and of Pundamilia nyerei

Project description:Cichlids fishes exhibit extensive phenotypic diversification and speciation. In this study we integrate transcriptomic and proteomic signatures from two cichlids species, identify novel open reading frames (nORFs) and perform evolutionary analysis on these nORF regions. We embark comparative transrcriptomics and proteogenomic analysis of two metabolically active tissues, the testes and liver, of two cichlid species Oreochromis niloticus (Nile tilapia, ON) and Pundamilia nyererei (Makobe Island, PN). Our results suggest that the time scale of speciation of the two species can be better explained by the evolutionary divergence of these nORF genomic regions.

2021-05-17 | GSE150744 | GEO

Oreochromis niloticus

Project description:Nile Tilapia Oreochromis niloticus sample Raw sequence reads

| PRJNA433300 | ENA

The liver,spleen,brain,intestine and kidney tissue of the Oreochromis niloticus which infected with Streptococcus agalactiae LC-MSMS

Project description:The Oreochromis niloticus was infected with S.agalactiae strain YM001, than collected the liver,spleen,brain,intestine and kidney tissue for proteome

2020-05-26 | PXD014616 | Pride

Oreochromis niloticus niloticus

Project description:Oreochromis niloticus niloticus Raw sequence reads

| PRJNA506530 | ENA

Oreochromis niloticus niloticus

Project description:Oreochromis niloticus niloticus Raw sequence reads

| PRJNA729911 | ENA

Transcriptome analysis of miRNA–mRNA interactions revealed regulation of multiple signaling pathways in genetically improved farmed tilapia (GIFT, Oreochromis niloticus) gill tissues under hypoxia stress

Project description:Dissolved oxygen (DO) is the basis of fish survival, and proper DO level is an important condition to ensure the normal growth of fish. Hypoxic environment is prone to disturb the normal breathing and metabolism of fish, which in turn affects their growth and survival. Gill tissue is the respiratory organs of fish and is in direct contact with the external environment. However, there are few reports on the molecular regulatory mechanism of genetically improved farmed tilapia (GIFT, Oreochromis niloticus) gill tissues in response to hypoxia. Here, we first examine the hypoxia-induced damage of gill tissue by hematoxylin-eosin staining, and then constructed miRNA and mRNA libraries of GIFT gill tissue at 96h of hypoxia stress by a high-throughput sequencing technology, each library has three biological replicates. Gill lamellae of GIFT showed capillary rupture and red blood cell enlargement and overflow under hypoxia stress. Transcription sequencing results showed that the clean reads of miRNA libraries were 9,627,953-13,544,660; the clean reads of mRNA libraries were 43,817,776-53,130,102. Based on the miRNA-mRNA pairs screening principles and mRNA sequencing results, we selected and verified seven differentially expressed miRNAs and their potential target genes. The sequencing results were consistent with the qRT-PCR validation results. These selected miRNA-mRNA pairs are mainly concentrated in the signaling pathways of immune response and metabolic regulation. This study provides new insights into the mechanisms of fish adaptation under hypoxic stress.

2023-02-22 | GSE145788 | GEO

Oreochromis niloticus

Project description:Oreochromis niloticus Metagenome

| PRJNA392982 | ENA

Oreochromis niloticus

Project description:Oreochromis niloticus overview

| PRJNA12436 | ENA

Oreochromis niloticus

Project description:Oreochromis niloticus Metagenome

| PRJNA798409 | ENA