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Oreochromis niloticus

ABSTRACT: Gut metagenome analyses of healthy and diseased Nile tilapia (Oreochromis niloticus) cultured in Bangladesh

PROVIDER: PRJNA871955 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR21160482_1.fastq.gz	Fastqsanger.gz
	SRR21160482_2.fastq.gz	Fastqsanger.gz
	SRR21160483_1.fastq.gz	Fastqsanger.gz
	SRR21160483_2.fastq.gz	Fastqsanger.gz
	SRR21160484_1.fastq.gz	Fastqsanger.gz

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Oreochromis niloticus

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Total RNA sequencing of the liver tissues of Oreochromis niloticus (Nile Tilapia) and of Pundamilia nyerei

Project description:Cichlids fishes exhibit extensive phenotypic diversification and speciation. In this study we integrate transcriptomic and proteomic signatures from two cichlids species, identify novel open reading frames (nORFs) and perform evolutionary analysis on these nORF regions. We embark comparative transrcriptomics and proteogenomic analysis of two metabolically active tissues, the testes and liver, of two cichlid species Oreochromis niloticus (Nile tilapia, ON) and Pundamilia nyererei (Makobe Island, PN). Our results suggest that the time scale of speciation of the two species can be better explained by the evolutionary divergence of these nORF genomic regions.

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Project description:Gonadal transcriptome analysis of foxl3 mutant XX and wild type XX, XY Nile tilapia (Oreochromis niloticus).

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Project description:Taxonomic and Functional characteristics of the gut and gill microbiota of healthy and diseased tilapia (Oreochromis niloticus)

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Nile tilapia (Oreochromis niloticus) gene expression profiling in males and females at early embryonic development (2, 5 and 9 days post fertilization )

Project description:Commercial production of tilapia relies on monosex cultures of males, which so far proved difficult to maintain in large scale production facilities. Thus, a better understanding of the genetic architecture of the complex trait of sex determination in tilapia is needed.We aimed to detect genes that were differentially expressed by gender at early embryonic development. Artificial fertilization of O. niloticus females with either sex-reversed males (ΔXX) or genetically-modified YY 'supermales' resulted in all-female and all-male embryos, respectively. Pools of all-female and all-male embryos at 2, 5 and 9 days post fertilization were used for custom Agilent eArray. 56 pool samples of Nile tilapia full siblings groups (female or male) at day 2, 5 or 9 post fertilization were subjected to total RNA extraction from whole embryo tissues and hybridized to the custom Agilent array. Each sample was yielded from different cross of artificial fertilization: six dams X five sires. The resulting gender were known based on the sire, sex-reversed males (ΔXX) or genetically-modified YY 'supermales' resulted in all-female and all-male embryos, respectively.

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The liver,spleen,brain,intestine and kidney tissue of the Oreochromis niloticus which infected with Streptococcus agalactiae LC-MSMS

Project description:The Oreochromis niloticus was infected with S.agalactiae strain YM001, than collected the liver,spleen,brain,intestine and kidney tissue for proteome

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Development of gene expression signatures for the HDF and MDA-MB-231 cells that received TP4 (a cationic antimicrobial peptide) treatment

Project description:Triple-negative breast cancer (TNBC) lacks therapeutic target and is difficult to treat. We report a cationic antimicrobial peptide (CAP), tilapia piscidin 4 (TP4), derived from Nile tilapia (Oreochromis niloticus), selectively toxic to TNBC. Here we aim to identify potential target in TNBC cell response to TP4 treatment by microarray study and to further address the role of TP4-resposive genes involved in TNBC cell death.

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Project description:Oreochromis niloticus isolate:F1 | breed:Nile tilapia Genome sequencing and assembly

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Oreochromis niloticus niloticus

Project description:Oreochromis niloticus niloticus Raw sequence reads

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