Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Sequencing of phoC-functional genes in dryland red soil for 42 sample

PROVIDER: PRJNA1083447 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28259002_1.fastq.gz	Fastqsanger.gz
	SRR28259002_2.fastq.gz	Fastqsanger.gz
	SRR28259003_1.fastq.gz	Fastqsanger.gz
	SRR28259003_2.fastq.gz	Fastqsanger.gz
	SRR28259004_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 84

Similar Datasets

Project description:Sequencing of phoC-functional genes in dryland red soil for 18 sample

| PRJNA1083426 | ENA

Project description:Sequencing of phoD-functional genes in dryland red soil for 42 sample

| PRJNA1083449 | ENA

Project description:Sequencing of functional genes in dryland red soil

| PRJNA1037297 | ENA

Project description:Sequencing of phoD-functional genes in dryland red soil for 18 sample

| PRJNA1083437 | ENA

Genome-scale transcription-translation mapping reveals features of Zymomonas mobilis transcription units and promoters

Project description:Limited functional annotation of the Z. mobilis genome is a current barrier to both basic studies of Z. mobilis and its development as a synthetic-biology chassis. To gain insight, we collected sample-matched multiomics data including RNA-seq, transcription start site sequencing (TSS-seq), termination sequencing (term-seq), ribosome profiling, and label-free shotgun proteomic mass spectrometry across different growth conditions to improve annotation and assign functional sites in the Z. mobilis genome. Proteomics and ribosome profiling informed revisions of protein-coding genes, which included 44 start codon changes and 42 added proteins.

2020-07-10 | PXD016962 | Pride

Project description:soil 96 phoc

| PRJNA1013227 | ENA

Homoeologous Chromosome Exchange Explains the Creation of a QTL Affecting Soil‐Borne Pathogen Resistance in Tobacco

Project description:Purpose: Investigate genes associated with Phn7.1, a major QTL influencing partial resistance to the soil-borne pathogen Phytophthora nicotianae in tobacco. Methods: Resistant and susceptible tobacco near isogenic lines with and without Phn7.1 QTL were subjected to the inoculation with Phytophthora nicotianae suspension and suspension buffer without pathogen as control followed by sample collection at 42 hour past inoculation for RNA-seq analysis. Results: Revealed gene expression profiles associated disease resistance and susceptiblilty.

2021-09-14 | GSE168854 | GEO

Project description:soil phoC Raw sequence reads

| PRJNA843445 | ENA

Functional environmental genomics of a municipal landfill soil

Project description:We investigated the toxicity of soil samples derived from a former municipal landfill site in the South of the Netherlands, where a bioremediation project is running aiming at reusing the site for recreation. Both an organic soil extract and the original soil sample was investigated using the ISO standardised Folsomia soil ecotoxicological testing and gene expression analysis. The 28 day survival/reproduction test revealed that the ecologically more relevant original soil sample was more toxic than the organic soil extract. Microarray analysis showed that the more toxic soil samples induced gene regulatory changes in twice as less genes compared to the soil extract. Consequently gene regulatory changes were highly dependent on sample type, and were to a lesser extent caused by exposure level. An important biological process shared among the two sample types was the detoxification pathway for xenobiotics (biotransformation I, II and III) suggesting a link between compound type and observed adverse effects. Finally, we were able to retrieve a selected group of genes that show highly significant dose-dependent gene expression and thus were tightly linked with adverse effects on reproduction. Expression of four cytochrome P450 genes showed highest correlation values with reproduction, and maybe promising genetic markers for soil quality. However, a more elaborate set of environmental soil samples is needed to validate the correlation between gene expression induction and adverse phenotypic effects.

2012-04-16 | GSE37154 | GEO

Project description:High-throughput sequencing of soil phoC gene amplicons

| PRJNA909054 | ENA