Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: cultivated yam sequencing

PROVIDER: PRJNA1085400 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28266500_1.fastq.gz	Fastqsanger.gz
	SRR28266500_2.fastq.gz	Fastqsanger.gz
	SRR28266501_1.fastq.gz	Fastqsanger.gz
	SRR28266501_2.fastq.gz	Fastqsanger.gz
	SRR28266502_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 31

Similar Datasets

Analysis of the N-Glycoforms of a Chinese Yam (Dioscorea opposita Thunb.) Glycoprotein 30CYGPAnalysis of the N-Glycoforms of a Chinese Yam (Dioscorea opposita Thunb.) Glycoprotein 30CYGP

Project description:Chinese yam (Dioscorea opposita Thumb.) is a highly nutritional perennial herbaceous rhizome. N-glycoforms from Chinese yam glycoprotein were analyzed, and the major glycoprotein in yam be identificated.

2019-10-28 | PXD015888 | Pride

Project description:yam-20230613

| PRJNA983516 | ENA

Project description:yam-20221230

| PRJNA917825 | ENA

Genome-wide survey of YY1 targets in C2C12 cells by High-throughput sequencing

Project description:By applying ChIP-seq, we generated genome-wide maps of YY1 in skeletal myoblasts and myotubes. We found that YY1 binds to 1820 confident target with a large portion residing in the intergenic regions. In addition, YY1 was found to activate many loci, and there is no significant overlap between YY1 and Ezh2 targets, suggensting a Ezh2-independent manner. Further detailed study revealed that YY1 can regulate some lincRNAs which are fucntional in skeletal myogenesis. In this study, we identified a YY1-Yam-1-miR-715 (TF-lincRNA-miRNA) regulatory curcuit in myogensis. Examination of YY1 targets in myoblast versus myotubes

2013-08-15 | E-GEOD-45875 | biostudies-arrayexpress

Changes in gene expression in gamma delta T cells induced by Yamoa

Project description:Yamoa™ is marketed and sold as a dietary supplement with anecdotal positive effects in asthma and hay fever. We determined that Yamoa™ (ground bark of Funtumia elastica tree) stimulated innate immunity in part by affecting gamma delta T cells. Yamoa™ had distinct priming effects, very similar to, but more robust than, that of lipopolysaccharide (LPS), on bovine, mouse and human gamma delta T cells. However, the optimal effect was dependent on the presence of accessory cells. Gene expression patterns in bovine gamma delta T cells and monocytes induced by Yamoa™ were very similar to those induced by ultrapure LPS, but the agonists in Yamoa™ did not signal entirely through TLR4. Yamoa™ stimulated human cells to produce cytokines involved innate protection. The bioactive component of Yamoa™ was delineated to a complex polysaccharide fraction (Yam-I). Intraperitoneal injection of Yamoa™ and very low doses of Yam-I in mice induced rapid increases peritoneal neutrophils directed by changes chemokine expression. Yamoa™ and Yam-I were effective as therapeutic treatments in mice with Salmonella enterica serotype Typhimurium (ST) induced enterocolitis that resulted in decreased bacterial counts in feces. This initial characterization of the immune stimulatory properties of polysaccharides derived from Yamoa™ suggests potential mechanisms for positive effects in asthma and that they have potential for application in infectious disease settings. . Keywords: comparison of 3 treatment types, LPS, Yamoa, innate, adjuvant

2009-08-31 | GSE13320 | GEO

Genomic dissection of small RNAs in wild rice (O.rufipogon): lessons for rice domestication [small RNA]

Project description:The lack of MIRNA set and genome sequence of O. rufipogon (the ancestor of the cultivated rice) has limited to answer the role of MIRNA genes in rice domestication. In this study, a genome, three small RNA populations and a degradome of O.rufipogon were sequenced by Illumina platform and miRNA expression were investigated by miRNA chips. A de novo genome was assembled using ~55x coverage of raw sequencing data and a total of 387 MIRNAs were identified in the O. rufipogon genome based on ~5.2 million unique small RNA reads from three different tissues of O. rufipogon. Of these O. rufipogon MIRNAs, 259 were not found in the cultivated rice, suggesting loss of these MIRNAs in the cultivated rice. We also found that 48 MIRNAs were novel in the cultivated rice, suggesting that they were potential targets of domestication selection. Some miRNAs showed significant expression difference in the wild and cultivated rice, suggesting that expression of miRNA could also be a target of domestication, as demonstrated for the miR164 family. Our results illustrated MIRNA genes, like protein-coding genes, were significantly shaped during rice domestication and could be one of the driven forces contributed to rice domestication.

2012-08-10 | GSE39308 | GEO

Genome-wide survey of YY1 targets in C2C12 cells by High-throughput sequencing

2013-08-15 | GSE45875 | GEO

Project description:African yam domestication

| PRJNA515691 | ENA

Project description:African yam diversity

| PRJNA383673 | ENA

Dioscorea alata

Project description:Transcriptome sequencing of Dioscorea alata, Yam

| PRJNA1005995 | ENA