Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: plant-associated fungi

PROVIDER: PRJNA1110303 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28996500_1.fastq.gz	Fastqsanger.gz
	SRR28996500_2.fastq.gz	Fastqsanger.gz
	SRR28996600_1.fastq.gz	Fastqsanger.gz
	SRR28996600_2.fastq.gz	Fastqsanger.gz
	SRR28996401_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 418

Similar Datasets

Proteomics of endophytic fungi enhance plant growth promotion in rice root

Project description:Endophytic fungi are root-inhabiting fungi that can promote plant growth in a variety of ways. They can directly stimulate plant growth by producing phytohormones, such as auxin and gibberellins. They can also indirectly promote plant growth by helping plants to acquire nutrients, such as nitrogen and phosphorus, and by protecting plants from pests and pathogens.In this study, we used a proteomic approach to identify the proteins that are expressed in rice plants after they are treated with endophytic fungi. We found that the treatment with endophytic fungi resulted in the expression of a number of proteins involved in plant growth, nutrient acquisition, and defense. These results suggest that endophytic fungi can promote plant growth and improve plant resilience to stress.

2024-09-10 | PXD045242 | JPOST Repository

Proteomics of endophytic fungi enhance plant growth promotion in rice leaves

Project description:Endophytic fungi are fungi that live inside the roots of plants. They can promote plant growth through a variety of direct and indirect mechanisms. Direct mechanisms include the production of phytohormones, such as auxin and gibberellins, which can stimulate plant growth. Endophytic fungi can also fix nitrogen, solubilize phosphate, and produce siderophores, which are compounds that chelate iron and make it available to plants. In addition, some endophytic fungi produce antimicrobial metabolites that can protect plants from pests and pathogens. Indirect mechanisms include the induction of systemic resistance, which is a plant's ability to defend itself against pests and pathogens. Endophytic fungi can also help plants to tolerate abiotic stresses, such as drought, salinity, and heavy metals. In this study, we used a proteomic approach to identify the proteins that are expressed in rice plants after they are treated with endophytic fungi. We found that the treatment with endophytic fungi resulted in the expression of a number of proteins involved in plant growth, stress response, and defense. These results suggest that endophytic fungi can promote plant growth and improve plant resilience to stress.

2024-09-10 | PXD045243 | JPOST Repository

Project description:Plant-associated fungi in the Colorado Rocky Mountains

| PRJNA638968 | ENA

Gene profiling in arbuscular mycorrhizal symbiosis between the actinorhizal tree Casuarina glauca and the fungus Glomus intraradices.

Project description:Casuarina glauca belongs to a family of angiosperms called actinorhizal plants because they can develop nitrogen-fixing nodules in association with the soil bacteria Frankia. They can also develop arbuscular mycorrhizae (AM) while associated with Glomeromycota fungi. The aim of this transcriptomic study was to get a global view of the plant symbiotic genetic program in AM and to identify new key plant genes involved in endosymbioses.

2012-10-22 | GSE36676 | GEO

Genetic determinants of endophytism in the Arabidopsis root mycobiome

Project description:Roots of Arabidopsis thaliana do not engage in symbiotic association with mycorrhizal fungi but host taxonomically diverse fungal communities that influence health and disease states. We sequenced the genomes of 41 isolates representative of the A. thaliana root mycobiota for comparative analysis with 79 other plant-associated fungi. We report that root mycobiota members evolved from ancestors having diverse lifestyles and retained diverse repertoires of plant cell wall-degrading enzymes (PCWDEs) and effector-like small secreted proteins. We identified a set of 84 gene families predicting best endophytism, including families encoding PCWDEs acting on xylan (GH10) and cellulose (AA9). These genes also belong to a core transcriptional response induced by phylogenetically-distant mycobiota members in A. thaliana roots. Recolonization experiments with individual fungi indicated that strains with detrimental effects in mono-association with the host not only colonize roots more aggressively than those with beneficial activities but also dominate in natural root samples. We identified and validated the pectin degrading enzyme family PL1_7 as a key component linking aggressiveness of endophytic colonization to plant health.

2021-11-03 | GSE169629 | GEO

Transcriptomes of Two Esca Relevant Fungi, Phaeoacremonium aleophilum and Phaeomoniella chlamydospora, Respond Very Differently to Co-cultured Vitis callus Culture

Project description:In order to understand how P.al and P.ch respond to the environment set by V. vinifera we analyzed the transcriptomes of two fungi in axenic or mixed cultures with V. vinifera plant cells (callus culture). We could observe that these fungi respond with different strategies to the plant cell challange where P.ch induces de-toxification and translation machinery genes and P.al alters primary metabolism and induces heat shock related genes.

2016-04-01 | GSE67197 | GEO

Project description:Plant pathogenic fungi

| PRJNA956473 | ENA

Project description:plant pathogenic fungi

| PRJNA827019 | ENA

Project description:Plant litter fungi.

| PRJNA1070811 | ENA

Neofusicoccum parvum

Project description:Plant pathogenic fungi

| PRJNA189812 | ENA