Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Avena sativa leaf transcriptome data

PROVIDER: PRJNA1246762 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR32995265_1.fastq.gz	Fastqsanger.gz
	SRR32995265_2.fastq.gz	Fastqsanger.gz
	SRR32995266_1.fastq.gz	Fastqsanger.gz
	SRR32995266_2.fastq.gz	Fastqsanger.gz
	SRR32995267_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Impact of barley yellow dwarf virus on the composition of metabolites in

Project description:Greenhouse experiment testing the effects of Barley yellow dwarf virus on Avena sativa and the fate of isotopically labeled MAOM added to soil

2024-04-17 | MSV000094560 | MassIVE

Machine learning accelerates the dissection of mitostasis as a cross-species central biological hub for leaf senescence

Project description:Leaf senescence is a tightly controlled and complex developmental process that shares many similarities across species, yet our understanding of the underlying conserved molecular mechanisms is still lacking. Here, we observed functional conservation of leaf senescence underlying pathways in A. thaliana, O. sativa, and S. lycopersicum. From machine learning-based integration of data from nearly 10 000 samples to obtain a universal regulatory network of leaf senescence, it was found that mitostasis is the cross-species central biological hub. We measure and compare changes in the transcriptome and metabolome of A. thaliana, O. sativa, and S. lycopersicum leaves under mitostress/natural senescence. In data from different species, mitostasis-related transcription factors binding site enrichment and amino acids expression changes converge on putative senescence modulators. Our study provides a cross-species, multi-omics perspective for understanding the leaf senescence conserved mechanisms.

2022-05-03 | GSE201607 | GEO

Screening Salinity Tolerance and Transcriptome Analysis in Rice (Oryza sativa L.)

Project description:Comparative transcriptome sequencing in leaf and root tissues of Control and Salt-treated Oryza sativa generated 52.2 and 17.29 million high-quality reads.

2019-06-05 | GSE132153 | GEO

E-ENAD-25

Project description:The developmental dynamics of the maize leaf transcriptome

2019-03-28 | E-ENAD-25 | ExpressionAtlas

Transcriptome analysis of RGA1 mutant (d1) by RNA-seq

Project description:We applied RNA-seq to 60-day-old rice (Oryza sativa) flag leaf tissue to investigate the effect of RGA1 mutation on the transcriptome in d1 as compared to wild type plant.

2017-12-23 | GSE103747 | GEO

Project description:Medicago sativa leaf transcriptome data

| PRJNA1246763 | ENA

Dynamic Profiles of transcriptome in Oryza sativa leaf

Project description:To evaluate the roles of gene regulation in Oryza sativa leaf, dynamic profiles of transcriptome were investigated in Oryza sativa L. spp. indica with different treatments, the aerial tissues of one-month-old plants from four different areas (groups 1–4) were treated with 0, 40 mL of 25% azoxystrobin, 0.01 g of VdAL, or 40 mL of 25% azoxystrobin plus 0.01 g VdAL, respectively.

2018-12-18 | GSE108204 | GEO

Project description:Avena sativa L Transcriptome Sequencing

| PRJNA393896 | ENA

Project description:Oat (Avena sativa L.) transcriptome

| PRJNA523140 | ENA

Characterization of small RNAs and their targets in Lactuca sativa

Project description:The small RNAs and their targets were characterized in lettuce (Lactuca sativa) genome by deep sequencing the small RNA populations of leaf tissues (cv. Salinas, Cobham and Diana), inoculated with Bremia and mock. The small RNA targets were also validated using PARE/degradome data derived from the same tissues.

2017-04-13 | GSE84280 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data