Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Homo sapiens strain:(KHV) Kinh in Ho Chi minh City, Vietnam

ABSTRACT: Exome sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam HapMap population. DNA for sequencing was extracted from whole blood

PROVIDER: PRJNA177413 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR821960_1.fastq.gz	Fastqsanger.gz
	SRR821960_2.fastq.gz	Fastqsanger.gz
	SRR821961_1.fastq.gz	Fastqsanger.gz
	SRR821961_2.fastq.gz	Fastqsanger.gz
	SRR821962_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 114

Similar Datasets

Homo sapiens strain:(KHV) Kinh in Ho Chi minh City, Vietnam

Project description:CompleteGenomics sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam

| PRJNA177965 | ENA

Homo sapiens strain:(KHV) Kinh in Ho Chi minh City, Vietnam

Project description:Exome sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam HapMap population

| PRJNA59815 | ENA

Homo sapiens strain:(KHV) Kinh in Ho Chi minh City, Vietnam

Project description:Whole genome sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam HapMap population

| PRJNA42575 | ENA

Homo sapiens strain:(KHV) Kinh in Ho Chi minh City, Vietnam

Project description:Whole genome sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam HapMap population from primary blood

| PRJNA177380 | ENA

Homo sapiens strain:(KHV) Kinh in Ho Chi minh City, Vietnam

Project description:CompleteGenomics sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam. DNA for sequencing was extracted from whole blood

| PRJNA194104 | ENA

Homo sapiens strain:(KHV) Kinh in Ho Chi minh City, Vietnam

Project description:Whole genome sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam. DNA for sequencing was extracted from whole blood

| PRJNA177401 | ENA

The dynamics of GII.4 Norovirus in Ho Chi Minh City, Vietnam.

Project description:Norovirus (NoV) is a major cause of epidemic gastroenteritis in industrialized countries, yet the epidemiological significance of NoV in industrializing countries remains poorly understood. The spatiotemporal distribution of NoV genotypes identified in 2054 enrolled children was investigated between May 2009 and December 2010, in Ho Chi Minh City (HCMC), Vietnam. A total of 315 NoV extracted from stool samples were genotyped and GPS mapped to their source. Genogroup II NoV, particularly GII.4, were predominant, and the GII.4 strains could be subgrouped into GII.4-2006b (Minerva) and GII.4-2010 (New Orleans) variants. There was no spatiotemporal structure among the endemic GII strains; yet a significant spatiotemporal signal corresponding with the novel introduction of GII.4-2010 variant was detected. These data show that NoV GII.4 variants are highly endemic in HCMC and describe a scenario of rapid NoV strain replacement occurring in HCMC in early 2010.

| S-EPMC4047827 | biostudies-literature

Endemic norovirus infections in children, Ho Chi Minh City, Vietnam, 2009-2010.

Project description:We performed a case-control investigation to identify risk factors for norovirus infections among children in Vietnam. Of samples from 1,419 children who had diarrhea and 609 who were asymptomatic, 20.6% and 2.8%, respectively, were norovirus positive. Risk factors included residential crowding and symptomatic contacts, indicating person-to-person transmission of norovirus.

| S-EPMC3713809 | biostudies-literature

Genetic and antigenic characterization of enterovirus 71 in Ho Chi Minh City, Vietnam, 2011.

Project description:Enterovirus 71 (EV71) frequently causes fatal infections in young children in Asia. In 2011, EV71 epidemics occurred in southern Vietnam. We conducted genetic and antigenic analysis of the EV71 isolates and found that 94% of them were genotype C4a related to two lineages circulating in China and 6% were genotype C5 which have circulated in Vietnam since 2003. Antigenic variants were not detected. EV71 vaccines are being developed. Longitudinal enterovirus surveillance data are critical to formulate vaccination policy in Vietnam.

| S-EPMC3726754 | biostudies-literature

Effects of Extreme Temperatures on Mortality and Hospitalization in Ho Chi Minh City, Vietnam.

Project description:There is a lack of research focusing on the association of temperature with mortality and hospitalization in developing countries with tropical climates and a low capacity to cope with the influences of extreme weather events. This study aimed to examine and compare the effect of temperature, including heat waves, on mortality and hospitalization in the most populous city of Vietnam. We used quasi-Poisson time series regression coupled with the distributed lag non-linear model (DLNM) to examine the overall pattern and compare the temperature-health outcome relationship. The main and added effects of heat waves were evaluated. The main effect of heat waves significantly increased the risk of all cause-specific mortality. Significant main effects of heat waves on hospitalization were observed only for elderly people and people with respiratory diseases (elderly, relative risk (RR) = 1.28, 95% confidence interval (CI) = 1.14?3.45; respiratory diseases, RR = 1.3, 95% CI = 1.19?1.42). The RRs of the main effect were substantially higher than those of the added effect in mortality; the same was applicable for hospitalizations of people with respiratory diseases and elderly people. The findings of this study have important implications for public health adaptation and prevention program implementation in the protection of residents from the adverse health effects of temperature.

| S-EPMC6388260 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data