Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Amaranthus tricolor

ABSTRACT: Transcriptome sequencing and comparative analysis during the induction of in vitro flowering in Amaranthus tricolor Transcriptome or Gene expression

PROVIDER: PRJNA202395 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR924083.fastq.gz	Fastqsanger.gz
	SRR924089.fastq.gz	Fastqsanger.gz
	SRR924090.fastq.gz	Fastqsanger.gz
	SRR924091.fastq.gz	Fastqsanger.gz
	SRR924092_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Amaranthus tricolor

Project description:Amaranthus tricolor Assembly

| PRJNA743898 | ENA

Amaranthus tricolor

Project description:Amaranthus tricolor overview

| PRJNA397471 | ENA

Amaranthus tricolor

Project description:Genome project of Amaranthus tricolor

| PRJNA891371 | ENA

Amaranthus tricolor

Project description:Genetic diversity of Amaranthus tricolor genetic resources based on genome-wide SNPs

| PRJDB12448 | ENA

Amaranthus tricolor cultivar:Dahong

Project description:Amaranthus tricolor cultivar:Dahong Raw sequence reads

| PRJNA397307 | ENA

Proteomic response of Escherichia coli to membrane lytic and iron chelating Amaranthus tricolor defensin

Project description:Plant defensins are a broadly distributed family of antimicrobial peptides which have been primarily studied for agriculturally relevant antifungal activity. Recent studies have probed defensins against gram negative bacteria revealing evidence for multiple mechanisms of action including membrane lysis and ribosomal inhibition. In this study, a γ-core motif synthetic analog ( Atr-DEF2(G39-C55) ) of Amaranthus tricolor DEF2 (Atr-DEF2) is used to probe plant defensin antibacterial mechanism of action via proteomics.

2021-04-14 | PXD024138 | Pride

PepSAVI-MS reveals proline-rich antimicrobial peptide in Amaranthus tricolor

Project description:PepSAVI-MS, a mass spectrometry-based peptidomics pipeline, was implemented for antimicrobial peptide (AMP) discovery in the medicinal plant Amaranthus tricolor. This investigation revealed a novel 1.7 kDa AMP, deemed Atr-AMP1. Initial efforts to determine the sequence of Atr-AMP1 utilized chemical derivatization and enzymatic digestion to provide information about specific residues and post-translational modifications. EThcD (electron-transfer/higher-energy collision dissociation) produced extensive backbone fragmentation and facilitated de novo sequencing, the results of which were consistent with orthogonal characterization experiments. Additionally, multistage HCD (higher-energy collisional dissociation) facilitated discrimination between isobaric leucine and isoleucine. These results revealed a positively-charged proline-rich peptide present in a heterogeneous population of multiple peptidoforms, possessing several post-translational modifications including a disulfide bond, methionine oxidation, and proline hydroxylation.

2020-05-26 | PXD014547 | Pride

Mass spectrometry guided by transcriptomics reveals multiple classes of predicted antimicrobial peptides in Amaranthus tricolor

Project description:Traditional medicinal plants are rich reservoirs of antimicrobial agents, including antimicrobial peptides (AMPs). Herein, Amaranthus tricolor AMPs predicted in silico are identified via proteomics profiling. Bottom-up proteomics identified seven novel peptides spanning three AMP classes including lipid transfer proteins, snakins and defensins. Characterization via top-down peptidomic analysis of Atr-SN1, Atr-DEF1, and Atr-LTP1 revealed unexpected proteolytic processing and enumerated disulfide bonds. These results highlight the potential for integrating AMP prediction algorithms with complementary -omics approaches to accelerate characterization of biologically relevant AMP peptidoforms.

2021-04-08 | PXD022242 | Pride

Amaranthus tuberculatus

Project description:Amaranthus tuberculatus Transcriptome

| PRJNA432348 | ENA

Amaranthus palmeri

Project description:Amaranthus palmeri reference transcriptome

| PRJNA390774 | ENA