Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sciurinae

ABSTRACT: The phylogeography of endemic Sulawesi squirrels generated from high throughput sequencing of museum specimens

PROVIDER: PRJNA284011 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2103830_1.fastq.gz	Fastqsanger.gz
	SRR2103830_2.fastq.gz	Fastqsanger.gz
	SRR2103611_1.fastq.gz	Fastqsanger.gz
	SRR2103611_2.fastq.gz	Fastqsanger.gz
	SRR2103831_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 22

Similar Datasets

Project description:A high throughput sequencing approach for octocoral museum specimens

| PRJNA670602 | ENA

To explore the relationship between new gene expression / mutation and survival of patients in colorectal cancer

Project description:Interventions: Case vs control:No Primary outcome(s): High-throughput sequencing Study Design: Case-Control study

| 2676067 | ecrin-mdr-crc

Project description:Shotgun sequencing of museum specimens (Tenebrionidae: Pedinini)

| PRJNA443422 | ENA

Project description:Drosophila melanogaster genomes from museum specimens

| PRJNA945389 | ENA

Project description:Gut Microbiota of Amphibian Museum Specimens

| PRJNA836960 | ENA

Project description:Bisulfite ddRAD sequencing of historic Peromyscus museum specimens

| PRJNA578759 | ENA

RNA Sequencing Analysis Generates Comprehensive Transcriptomic Landscape and Identifies PTK6 as a Novel Tumor Suppressor Gene in Esophageal Squamous Cell Carcinoma

Project description:We performed the integrative transcriptome analysis of human esophageal squamous cell carcinoma (ESCC) using Illumina high-throughput sequencing. A total of 187 million 38bp sequencing reads were generated containing 7 billion bases for three pairs of matched patient-derived ESCC clinical specimens and their adjacent non-tumorous tissues. By investigating the digital gene expression profiling, we found 1425 genes significantly differentially expressed and detected more than 9000 SNPs across all six samples. We also identified protein tyrosine kinase 6 (PTK6) as a novel tumor suppressor gene, which is critical in ESCC development. Analysis of whole transcriptome from 3 paired patient-derived ESCC clinical specimens and their adjacent non-tumorous tissues.

2012-06-01 | E-GEOD-29968 | biostudies-arrayexpress

Exploring the effect of different surgical methods on the prognosis of patients with colorectal cancer based on multiple omics

Project description:Interventions: left hemicolectomy:None;right hemicolectomy:None;sigmoid resection:None;radical rectal cancer:None;low rectal resection with prophylactic ileostomy:None Primary outcome(s): Fecal high-throughput sequencing;Fecal Metabolomics;immunomics Study Design: Factorial

| 85716 | ecrin-mdr-crc

Oryzias

Project description:ddRAD sequencing of Oryzias endemic to central Sulawesi

| PRJDB7913 | ENA

RNA-seq of four tissue samples of dedifferentiated liposarcoma and corresponding matched well-differentiated liposarcoma

Project description:Dedifferentiated liposarcoma (DDL) has the same cellular and molecular genetics features as well-differentiated liposarcoma (WDL), and there is still no ideal biomarker for the prediction of DDL patient prognosis in clinical practice. In order to explore the genes that cause WDL to obtain local invasion and distant metastasis capacities and transform it into DDL, The four DDL tissue specimens in this study were matched with four WDL tissue specimens according to baseline characteristics, such as gender, age, and recurrence, before high-throughput sequencing was conducted. Then total RNAs were subjected to RNA isolation and RNA-seq analyses were generated by deep sequencing using Illumina Hiseq.

2021-09-17 | GSE184199 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data