Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Malassezia

ABSTRACT: Malassezia Genome sequencing and assembly

PROVIDER: PRJNA286710 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	LFCX01.dat.gz	Other
	LFCX01.fasta.gz	Fasta.gz
	LFCX01.master.dat	Other
	LFCY01.dat.gz	Other
	LFCY01.fasta.gz	Fasta.gz

Items per page:

1 - 5 of 198

Similar Datasets

Integrative genome annotation of Malassezia sympodialis

Project description:The skin commensal yeast Malassezia is associated with several skin disorders. To establish a reference resource, we sought to determine the complete genome sequence of Malassezia sympodialis and identify its protein-coding genes. A novel genome annotation workflow combining RNA sequencing, proteomics, and manual curation was developed to determine gene structures with high accuracy.

2016-12-20 | PXD003773 | Pride

Malassezia

Project description:Malassezia furfur and Malassezia Pachydermatis genome sequencing and assembly

| PRJNA288787 | ENA

Malassezia

Project description:Malassezia furfur and Malassezia Pachydermatis genome sequencing and assembly

| PRJNA322049 | ENA

Metabolic reconstruction of lipid metabolism of Malassezia

Project description:Malassezia species are lipophilic and lipid dependent yeasts belonging to the human and animal microbiota. Typically, they are isolated from regions rich in sebaceous glands. They have been associated with dermatological diseases such as seborrheic dermatitis, tinea versicolor, atopic dermatitis, and folliculitis. Genome sequences of Malassezia globosa, Malassezia sympodialis, and Malassezia pachydermatis lack genes related to fatty acid synthesis. Here, lipid synthesis pathways of M. furfur, M. pachydermatis, M. globosa, M. sympodialis and an atypical variant of M. furfur were reconstructed using genome data and Constraints Based Reconstruction and Analysis. The metabolic reconstruction allowed us to predict variation in the fluxes of each reaction over the network to satisfy the biomass objective function. Proteomic profiling improved and validated the models through data integration. Results suggest that several mechanisms including steroid and butanoate metabolism explain the yeast’s growth under different lipid conditions. Flux differences were observed in production of riboflavin in M. furfur and the biosynthesis of glycerolipids in the atypical variant of M. furfur and Malassezia sympodialis.

2017-10-02 | PXD004523 | Pride

Malassezia

Project description:Malassezia Genome sequencing

| PRJNA674991 | ENA

RNA-seq of Malassezia sympodialis

Project description:This data set is part of a study where the genome of Malassezia sympodialis (strain ATCC 42132) was sequenced using long-read technology and annotated using RNA-seq and proteogenomics. RNA was extracted at two different culture times (2 and 4 days). Seven RNA-seq libraries were prepared from independent samples. Two samples (P2 and P3) were enriched for protein-coding RNA using poly(A)-selection. The remaining five samples were processed with RiboMinus to deplete ribosomal RNA, and thus retain both mRNA and non-ribosomal noncoding RNA for sequencing. In total, we obtained 71 million RNA-seq read pairs mapping to genomic regions other than the highly expressed ribosomal loci.

2017-01-10 | E-MTAB-4589 | biostudies-arrayexpress

Malassezia furfur

Project description:Malassezia furfur Genome sequencing and assembly

| PRJNA732434 | ENA

Malassezia pachydermatis

Project description:Malassezia pachydermatis Genome sequencing and assembly

| PRJNA639054 | ENA

Malassezia furfur

Project description:Malassezia furfur Genome sequencing and assembly (CBS7982)

| PRJNA779728 | ENA

Malassezia nana strain:CBS9557

Project description:Malassezia nana strain:CBS9557 Genome sequencing and assembly