Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Thermosynechococcus vestitus BP-1

ABSTRACT: RNA-seq analysis of gene expression after exposure to hot and cold stress in WT cells of Thermosynechococcus elongatus, BP-1

PROVIDER: PRJNA287611 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2072050.fastq.gz	Fastqsanger.gz
	SRR2072060.fastq.gz	Fastqsanger.gz
	SRR2072070.fastq.gz	Fastqsanger.gz
	SRR2072080.fastq.gz	Fastqsanger.gz
	SRR2072090.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 78

Similar Datasets

RNA-seq analysis of gene expression after exposure to hot and cold stress in WT cells of Thermosynechococcus elongatus, BP-1

Project description:To investigate the temperature response in Thermosynechococcus elongatus (BP-1) and look for coordinated control in the cell, transcriptomes of BP-1 were measured using RNAseq following exposure to low and high temperature stress. The amount of temperature increase (53 to 61 °C) and decrease (53 to 45 °C) was based on the allowable range of continuous growth. The cells were growth in three separate culture tubes under LED light in a temperature-controlled submersible chamber under batch growth conditions. The temperature shift was conducted once the cells reached their target concentration of 1.5E7 cells/ml. A control experiment was conducted, in which the temperature remained at 53 °C, ensuring that the cellular physiology and light attenuation were comparable and that the only difference between the hot and cold treatments relative to the control treatment was temperature.

2015-06-22 | GSE70086 | GEO

Thermosynechococcus vestitus BP-1

Project description:Analysis of Thermosynechococcus elongatus BP1 response to co-cultivation with Meiothermus ruber strain A

| PRJNA368993 | ENA

Identification of small open reading frame encoded peptides of Thermosynechococcus vestitus BP-1(2133)

Project description:Identification of small open reading frame encoded peptides of Thermosynechococcus vestitus BP-1(2133)

2025-01-09 | PXD059620 |

Thermosynechococcus vestitus BP-1

Project description:Screening for candidate clock-controlled genes

| PRJNA91773 | ENA

Thermosynechococcus vestitus BP-1

Project description:Thermophilic cyanobacterium that contains an unusual number of type II introns

| PRJNA308 | ENA

Thermosynechococcus elongatus PKUAC-SCTE542

Project description:Thermosynechococcus elongatus PKUAC-SCTE542 genome sequencing

| PRJNA489155 | ENA

Thermosynechococcus vestitus

Project description:Thermophilic cyanobacterium

| PRJNA35193 | ENA

Species-specific transcriptomic network inference of interspecies interactions

Project description:A cyanobacterium, Thermosynechococcus elongatus BP1, was cultured with a heterotroph, Meiothermus ruber strain A, under a variety of conditions. A gene co-expression approach was used to infer a network of T. elongatus and M. ruber genes, with a focus on those genes from different species that were co-expressed, highlighting potential points of coordination and interaction.

2018-04-14 | GSE113134 | GEO

Thermosynechococcus

Project description:Thermosynechococcus sp. overview

| PRJNA231543 | ENA

BP-002

Project description:BP-002

| PRJEB42454 | ENA