Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Trypanosoma brucei

ABSTRACT: RNA-seq Transcriptome analysis of REG9.1 (Tb927.11.14220) when RNAi is induced, or not

PROVIDER: PRJNA322509 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3571760_1.fastq.gz	Fastqsanger.gz
	SRR3571760_2.fastq.gz	Fastqsanger.gz
	SRR3571761_1.fastq.gz	Fastqsanger.gz
	SRR3571761_2.fastq.gz	Fastqsanger.gz
	SRR3571762_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Trypanosoma brucei

Project description:RNA-seq Transcriptome analysis of REG9.1 (Tb927.11.14220) when overexpression is induced, or not using ectopic expression vector pLEW

| PRJNA322511 | ENA

Trypanosoma brucei brucei

Project description:RNAi of TbNMD3 in procyclic form Trypanosoma brucei lines

| PRJNA279318 | ENA

Phenotypic activation and repression of three ELAV-like proteins in Trypanosoma brucei

Project description:Three potential ELAV-like proteins of T. brucei, including Tb927.3.2930, Tb927.7.5380, and Tb927.8.6650, were either inhibited by RNAi or phenotypically activated by over-expression, followed by microarray analysis of the transcriptome. The results indicated that these ELAV-like proteins regulate the abundance of a large number of T. brucei transcripts, potentially through regulation of mRNA stability. Each of the three ELAV-like proteins were either inhibited by RNAi or over-expressed, in stable transgenic procyclic form cell lines. Total RNA was extracted 48h after tetracycline induction of the constructs (except for total RNA from Tb927.8.6650 RNAi which was extracted 24h after tet-induction), and sent to NimbleGen for cDNA synthesis and hybridization. Non-induced cells were analyzed in parallel.

2013-04-18 | E-GEOD-46161 | biostudies-arrayexpress

Trypanosoma brucei

Project description:Transcriptome-wide analysis of mRNA decay

| PRJNA251598 | ENA

Phenotypic activation and repression of three ELAV-like proteins in Trypanosoma brucei

2013-04-18 | GSE46161 | GEO

Trypanosoma brucei

Project description:RIP-Seq analysis of Trypanosoma brucei ELAV-like protein Tb927.8.6650

| PRJNA197395 | ENA

Trypanosoma brucei brucei

Project description:Transcriptome analysis of Cymelarsan resistant and Cymelarsan sensitive strains of Trypanosoma brucei.

| PRJNA131373 | ENA

RNAi targeting ZC3H20 in differentiating EATRO1125 Trypanosoma brucei

Project description:RNAi was induced for 24h at the same tie as differentiation was induced.

2019-06-02 | E-MTAB-7995 | biostudies-arrayexpress

In vivo RNA interference RNAi target sequencing of Trypanosoma brucei

Project description:A direct comparison of RNAi in vitro with RNAi in vivo is being performed using RNA interference (RNAi) target sequencing (RIT-Seq) of Trypanosoma brucei to identify all genes specifically required for growth in vivo (the infectome). Assembly of the bloodstream-form T. brucei RNAi library and the RNAi target sequencing (RIT-seq) approach in African trypanosomes were reported previously in Alsford, S. et al. High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome. Genome Res 21, 915-924, 264 doi:gr.115089.110 [pii] 265 10.1101/gr.115089.110 (2011) and Alsford,S et al. High-throughput decoding of antitrypanosomal drug efficacy and resistance. Nature 482, 232236 doi:10.1038/nature10771 (2012). This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2014-01-21 | E-ERAD-110 | biostudies-arrayexpress

RNAi of XAC1 (Tb927.7.2780) in Trypanosoma brucei bloodstream forms

Project description:Gradient fractions of RNAi of XAC1 (Tb927.7.2780) in Trypanosoma brucei bloodstream forms. RNAi was induced using tetracycline and cell extracts were fractionated into polysomal and monosome-non-ribosome-associated fractions.

2017-12-16 | E-MTAB-6239 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data